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Aliases for PIR48139 Gene

Subcategory (RNA class) for PIR48139 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR48139 Gene

No Aliases found

ORGUL Members for PIR48139 Gene

Previous GeneCards Identifiers for PIR48139 Gene

  • GC11P071727

No data available for External Ids for PIR48139 Gene

Summaries for PIR48139 Gene

GeneCards Summary for PIR48139 Gene

PIR48139 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48139 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48139 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48139 Gene

Genomics for PIR48139 Gene

GeneHancer (GH) Regulatory Elements for PIR48139 Gene

Promoters and enhancers for PIR48139 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J072014 Enhancer 0.5 dbSUPER 650.7 -0.8 -766 0.8 CTCF ZNF10 ZNF143 SMC3 ZBTB33 PIR31278 PIR48139 LOC100128494 LRTOMT NUMA1
GH11J072037 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 0.3 +24.8 24776 6.7 HDGF PKNOX1 CLOCK FOXA2 SMAD1 MLX ARID4B NEUROD1 SIN3A FEZF1 LRTOMT NUMA1 FAM86C1 LOC100128494 LAMTOR1 ANAPC15 FOLR3 IL18BP RNF121 PHOX2A
GH11J072023 Enhancer 1.1 ENCODE dbSUPER 0.4 +8.9 8865 3 HDGF RB1 ARID4B SIN3A ZNF2 ZNF48 RAD21 ZNF121 ARID2 ZNF143 LRTOMT NUMA1 IL18BP ANAPC15 RNF121 LAMTOR1 PHOX2A FAM86C1 PIR48139 GC11M072049
GH11J072017 Enhancer 0.2 dbSUPER 0.7 +2.1 2104 1.3 LRTOMT NUMA1 FAM86C1 PIR48139 LOC100128494 GC11M072049
GH11J072045 Enhancer 0.4 ENCODE dbSUPER 0.3 +29.2 29210 0.3 GC11M072049 PIR48139 NUMA1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR48139 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48139 Gene

Genomic Locations for PIR48139 Gene
chr11:72,016,073-72,016,101
(GRCh38/hg38)
Size:
29 bases
Orientation:
Plus strand
chr11:71,727,119-71,727,147
(GRCh37/hg19)
Size:
29 bases
Orientation:
Plus strand

Genomic View for PIR48139 Gene

Genes around PIR48139 on UCSC Golden Path with GeneCards custom track

PIR48139 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48139 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48139 Gene

Function for PIR48139 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48139 Gene

Localization for PIR48139 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48139 Gene

Pathways & Interactions for PIR48139 Gene

SuperPathways for PIR48139 Gene

No Data Available

Interacting Proteins for PIR48139 Gene

Gene Ontology (GO) - Biological Process for PIR48139 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48139 Gene

Drugs & Compounds for PIR48139 Gene

No Compound Related Data Available

Transcripts for PIR48139 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48139 Gene

No ASD Table

Relevant External Links for PIR48139 Gene

GeneLoc Exon Structure for
PIR48139

No data available for mRNA/cDNA for PIR48139 Gene

Expression for PIR48139 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48139 Gene

Orthologs for PIR48139 Gene

No data available for Orthologs and Evolution for PIR48139 Gene

Paralogs for PIR48139 Gene

No data available for Paralogs for PIR48139 Gene

Variants for PIR48139 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48139 Gene

Disorders for PIR48139 Gene

No disorders were found for PIR48139 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48139 Gene

Publications for PIR48139 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48139 Gene

Sources for PIR48139 Gene

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