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Aliases for PIR48135 Gene

Subcategory (RNA class) for PIR48135 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR48135 Gene

No Aliases found

ORGUL Members for PIR48135 Gene

Previous GeneCards Identifiers for PIR48135 Gene

  • GC16P071950

No data available for External Ids for PIR48135 Gene

Summaries for PIR48135 Gene

GeneCards Summary for PIR48135 Gene

PIR48135 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48135 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48135 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48135 Gene

Genomics for PIR48135 Gene

GeneHancer (GH) Regulatory Elements for PIR48135 Gene

Promoters and enhancers for PIR48135 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J071915 Promoter 0.6 EPDnew 650.7 -1.0 -977 0.1 JUN PIR48135 IST1 PIR45337
GH16J071916 Enhancer 0.2 ENCODE 650.7 +0.3 324 1 PIR48135 PHLPP2 ZNF23 GC16P071931 IST1
GH16J071893 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE 0.3 -20.9 -20930 3.8 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC IST1 PIR43283 ZNF821 PIR45337 PHLPP2 HYDIN ENSG00000247324 ZNF19 DHX38 ENSG00000261673
GH16J071926 Enhancer 0.8 ENCODE 0.4 +11.8 11803 3.5 NFIB JUN MZF1 ZBTB40 ZEB1 HIC1 FOSL1 GATA3 ZNF366 POLR2A GC16P071931 IST1 HP MARVELD3 HPR PIR48135 PKD1L3
GH16J071899 Enhancer 0.7 Ensembl ENCODE 0.4 -16.2 -16220 1.1 ZNF362 IKZF1 CEBPB HMBOX1 MLLT1 SPI1 IST1 PIR45337 PIR48135
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR48135 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48135 Gene

Genomic Locations for PIR48135 Gene
chr16:71,916,578-71,916,604
(GRCh38/hg38)
Size:
27 bases
Orientation:
Plus strand
chr16:71,950,481-71,950,507
(GRCh37/hg19)
Size:
27 bases
Orientation:
Plus strand

Genomic View for PIR48135 Gene

Genes around PIR48135 on UCSC Golden Path with GeneCards custom track

PIR48135 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48135 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48135 Gene

Function for PIR48135 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48135 Gene

Localization for PIR48135 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48135 Gene

Pathways & Interactions for PIR48135 Gene

SuperPathways for PIR48135 Gene

No Data Available

Interacting Proteins for PIR48135 Gene

Gene Ontology (GO) - Biological Process for PIR48135 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48135 Gene

Drugs & Compounds for PIR48135 Gene

No Compound Related Data Available

Transcripts for PIR48135 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48135 Gene

No ASD Table

Relevant External Links for PIR48135 Gene

GeneLoc Exon Structure for
PIR48135

No data available for mRNA/cDNA for PIR48135 Gene

Expression for PIR48135 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48135 Gene

Orthologs for PIR48135 Gene

No data available for Orthologs and Evolution for PIR48135 Gene

Paralogs for PIR48135 Gene

No data available for Paralogs for PIR48135 Gene

Variants for PIR48135 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48135 Gene

Disorders for PIR48135 Gene

No disorders were found for PIR48135 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48135 Gene

Publications for PIR48135 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48135 Gene

Sources for PIR48135 Gene

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