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Aliases for PIR48130 Gene

Subcategory (RNA class) for PIR48130 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR48130 Gene

No Aliases found

ORGUL Members for PIR48130 Gene

Previous GeneCards Identifiers for PIR48130 Gene

  • GC06M153347

No data available for External Ids for PIR48130 Gene

Summaries for PIR48130 Gene

GeneCards Summary for PIR48130 Gene

PIR48130 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48130 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48130 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48130 Gene

Genomics for PIR48130 Gene

GeneHancer (GH) Regulatory Elements for PIR48130 Gene

Promoters and enhancers for PIR48130 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J153024 Enhancer 0.7 ENCODE 650.7 +1.9 1870 0.2 CTCF IRF2 PKNOX1 ATF1 ERF KDM3A RAD21 TEAD3 ZNF614 ZNF143 PIR48130 VIP MTRF1L RGS17
GH06J153089 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.2 -65.3 -65254 3.8 JUN MAX SIN3A EBF1 BATF IRF4 EED ZSCAN5C ATF7 ZSCAN29 RGS17 MTRF1L PIR48130
GH06J153117 Enhancer 0.9 Ensembl ENCODE 0.2 -92.3 -92273 1.5 PKNOX1 JUN BACH1 BMI1 BATF IRF4 ATF7 NFE2 FOSL2 FOS RGS17 PIR48130
GH06J153129 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE 0.1 -104.5 -104478 2.4 ZSCAN4 SIN3A KLF14 YY1 ZEB1 ZNF335 GLIS2 ZNF213 ZSCAN5C KLF7 RGS17 GC06P153131 PIR48130
GH06J153032 Enhancer 0.4 ENCODE 0.4 -6.0 -5950 0.1 CTCF ZNF654 RAD21 MTRF1L PIR48130 RGS17
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR48130 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48130 Gene

Genomic Locations for PIR48130 Gene
chr6:153,026,455-153,026,481
(GRCh38/hg38)
Size:
27 bases
Orientation:
Minus strand
chr6:153,347,590-153,347,616
(GRCh37/hg19)
Size:
27 bases
Orientation:
Minus strand

Genomic View for PIR48130 Gene

Genes around PIR48130 on UCSC Golden Path with GeneCards custom track

PIR48130 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48130 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48130 Gene

Function for PIR48130 Gene

Phenotypes From GWAS Catalog for PIR48130 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48130 Gene

Localization for PIR48130 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48130 Gene

Pathways & Interactions for PIR48130 Gene

SuperPathways for PIR48130 Gene

No Data Available

Interacting Proteins for PIR48130 Gene

Gene Ontology (GO) - Biological Process for PIR48130 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48130 Gene

Drugs & Compounds for PIR48130 Gene

No Compound Related Data Available

Transcripts for PIR48130 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48130 Gene

No ASD Table

Relevant External Links for PIR48130 Gene

GeneLoc Exon Structure for
PIR48130

No data available for mRNA/cDNA for PIR48130 Gene

Expression for PIR48130 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48130 Gene

Orthologs for PIR48130 Gene

No data available for Orthologs and Evolution for PIR48130 Gene

Paralogs for PIR48130 Gene

No data available for Paralogs for PIR48130 Gene

Variants for PIR48130 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48130 Gene

Disorders for PIR48130 Gene

No disorders were found for PIR48130 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48130 Gene

Publications for PIR48130 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48130 Gene

Sources for PIR48130 Gene

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