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Aliases for PIR48128 Gene

Subcategory (RNA class) for PIR48128 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR48128 Gene

No Aliases found

ORGUL Members for PIR48128 Gene

Previous GeneCards Identifiers for PIR48128 Gene

  • GC07P127343

No data available for External Ids for PIR48128 Gene

Summaries for PIR48128 Gene

GeneCards Summary for PIR48128 Gene

PIR48128 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48128 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48128 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48128 Gene

Genomics for PIR48128 Gene

GeneHancer (GH) Regulatory Elements for PIR48128 Gene

Promoters and enhancers for PIR48128 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J127707 Enhancer 0.6 ENCODE 0.7 +4.4 4433 1.3 JUND ZSCAN26 POLR2A ZNF366 ZSCAN4 ZFP37 FOS NFXL1 SND1 ENSG00000240790 LRRC4 LEP PIR48128 LOC100196944
GH07J127650 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.2 -50.7 -50688 3.7 DMAP1 YY1 ZNF213 E2F8 ZNF143 SP3 NFYC MEF2D ZNF610 GLIS1 SND1 GC07P127654 GC07P127653 ENSG00000240790 GCC1 ZNF800 ENSG00000243302 FSCN3 RPS10P15 RBM28
GH07J127683 Enhancer 0.7 ENCODE 0.4 -18.7 -18736 3.5 HDGF CTCF EBF1 FEZF1 BATF ZKSCAN1 NFATC1 IKZF2 RUNX3 ZNF687 SND1 ENSG00000240790 ENSG00000273270 PIR48128 GC07P127654 GC07P127653
GH07J127708 Enhancer 0.6 ENCODE 0.4 +5.6 5616 0.2 CTCF ZNF654 TRIM22 CEBPB REST CEBPG ZNF2 RAD21 SCRT2 SMC3 ENSG00000240790 SND1 LRRC4 LEP PIR48128 LOC100196944
GH07J127665 Enhancer 0.8 Ensembl ENCODE 0.3 -36.1 -36071 3.1 JUN JUNB BATF ATF2 NFIL3 SP1 GATA3 JUND NR2C1 HMBOX1 SND1 ENSG00000273270 GC07P127653 GC07P127654 PIR48128
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR48128 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48128 Gene

Genomic Locations for PIR48128 Gene
chr7:127,703,276-127,703,303
(GRCh38/hg38)
Size:
28 bases
Orientation:
Plus strand
chr7:127,343,330-127,343,357
(GRCh37/hg19)
Size:
28 bases
Orientation:
Plus strand

Genomic View for PIR48128 Gene

Genes around PIR48128 on UCSC Golden Path with GeneCards custom track

PIR48128 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48128 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48128 Gene

Function for PIR48128 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48128 Gene

Localization for PIR48128 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48128 Gene

Pathways & Interactions for PIR48128 Gene

SuperPathways for PIR48128 Gene

No Data Available

Interacting Proteins for PIR48128 Gene

Gene Ontology (GO) - Biological Process for PIR48128 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48128 Gene

Drugs & Compounds for PIR48128 Gene

No Compound Related Data Available

Transcripts for PIR48128 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48128 Gene

No ASD Table

Relevant External Links for PIR48128 Gene

GeneLoc Exon Structure for
PIR48128

No data available for mRNA/cDNA for PIR48128 Gene

Expression for PIR48128 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48128 Gene

Orthologs for PIR48128 Gene

No data available for Orthologs and Evolution for PIR48128 Gene

Paralogs for PIR48128 Gene

No data available for Paralogs for PIR48128 Gene

Variants for PIR48128 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48128 Gene

Disorders for PIR48128 Gene

No disorders were found for PIR48128 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48128 Gene

Publications for PIR48128 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48128 Gene

Sources for PIR48128 Gene

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