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Aliases for PIR48120 Gene

Subcategory (RNA class) for PIR48120 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR48120 Gene

No Aliases found

ORGUL Members for PIR48120 Gene

Previous GeneCards Identifiers for PIR48120 Gene

  • GC02P236568

No data available for External Ids for PIR48120 Gene

Summaries for PIR48120 Gene

GeneCards Summary for PIR48120 Gene

PIR48120 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48120 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48120 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48120 Gene

Genomics for PIR48120 Gene

GeneHancer (GH) Regulatory Elements for PIR48120 Gene

Promoters and enhancers for PIR48120 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J235658 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 650.7 -0.8 -763 2.6 SOX13 FOXA2 TAL1 CEBPG ZEB1 FOSL1 TCF12 VEZF1 CBFA2T2 FOS PIR48120 AGAP1-IT1 AGAP1
GH02J235661 Enhancer 0.6 ENCODE dbSUPER 650.7 +1.1 1117 0.2 RCOR1 KDM1A HNF4A PIR48120 PIR61952 AGAP1
GH02J235637 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -18.9 -18903 7.1 PKNOX1 FEZF1 RAD21 TCF12 EGR1 SCRT2 RCOR1 EGR2 TSHZ1 ZNF843 PIR48120 AGAP1-IT1 AGAP1
GH02J235665 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 +6.2 6179 1.6 PKNOX1 NFIB ARID4B NEUROD1 KLF17 MZF1 SIN3A DMAP1 THRB RCOR1 PIR61952 PIR48120 AGAP1
GH02J235614 Enhancer 1 Ensembl ENCODE dbSUPER 0.3 -44.3 -44312 3.6 IRF2 RFX1 TFE3 SAP130 ZNF48 ZSCAN9 ZFP69B RFX3 ZNF692 POLR2A PIR48120 AGAP1-IT1 AGAP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR48120 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48120 Gene

Genomic Locations for PIR48120 Gene
chr2:235,660,245-235,660,272
(GRCh38/hg38)
Size:
28 bases
Orientation:
Plus strand
chr2:236,568,889-236,568,916
(GRCh37/hg19)
Size:
28 bases
Orientation:
Plus strand

Genomic View for PIR48120 Gene

Genes around PIR48120 on UCSC Golden Path with GeneCards custom track

PIR48120 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48120 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48120 Gene

Function for PIR48120 Gene

Phenotypes From GWAS Catalog for PIR48120 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48120 Gene

Localization for PIR48120 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48120 Gene

Pathways & Interactions for PIR48120 Gene

SuperPathways for PIR48120 Gene

No Data Available

Interacting Proteins for PIR48120 Gene

Gene Ontology (GO) - Biological Process for PIR48120 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48120 Gene

Drugs & Compounds for PIR48120 Gene

No Compound Related Data Available

Transcripts for PIR48120 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48120 Gene

No ASD Table

Relevant External Links for PIR48120 Gene

GeneLoc Exon Structure for
PIR48120

No data available for mRNA/cDNA for PIR48120 Gene

Expression for PIR48120 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48120 Gene

Orthologs for PIR48120 Gene

No data available for Orthologs and Evolution for PIR48120 Gene

Paralogs for PIR48120 Gene

No data available for Paralogs for PIR48120 Gene

Variants for PIR48120 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48120 Gene

Disorders for PIR48120 Gene

No disorders were found for PIR48120 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48120 Gene

Publications for PIR48120 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48120 Gene

Sources for PIR48120 Gene

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