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Aliases for PIR48117 Gene

Subcategory (RNA class) for PIR48117 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR48117 Gene

No Aliases found

ORGUL Members for PIR48117 Gene

Previous GeneCards Identifiers for PIR48117 Gene

  • GC20M044987

No data available for External Ids for PIR48117 Gene

Summaries for PIR48117 Gene

GeneCards Summary for PIR48117 Gene

PIR48117 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48117 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48117 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48117 Gene

Genomics for PIR48117 Gene

GeneHancer (GH) Regulatory Elements for PIR48117 Gene

Promoters and enhancers for PIR48117 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J046358 Enhancer 1.2 Ensembl ENCODE dbSUPER 650.7 -0.9 -871 1.5 HDGF PKNOX1 STAT5A BMI1 BATF IRF4 ZNF143 ATF7 ETV6 BCLAF1 PIR48117 SLC12A5 SLC12A5-AS1 ELMO2 SLC35C2 GC20M046352
GH20J046356 Enhancer 0.7 ENCODE dbSUPER 650.7 +1.2 1188 2 ZFHX2 POLR2A RUNX3 EGR2 PIR48117 ELMO2 SLC12A5 SLC12A5-AS1 GC20M046352 SLC35C2 GC20P046317
GH20J046361 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 0.4 -5.5 -5528 6 HDGF PKNOX1 CLOCK FOXA2 MLX ZFP64 ARID4B NEUROD1 SIN3A DMAP1 SLC35C2 ENSG00000273828 CD40 PCIF1 NCOA5 SLC12A5 SLC12A5-AS1 ELMO2 GC20M046352 PIR48117
GH20J046348 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 +8.2 8218 4.2 HDGF PKNOX1 ATF1 RB1 IRF4 RAD21 ARID2 SCRT2 ZNF143 IKZF2 NCOA5 ZNF335 SLC35C2 TP53RK ELMO2 ZSWIM1 SPATA25 CDH22 PIR48117 GC20P046317
GH20J046343 Enhancer 0.6 Ensembl 0.4 +15.2 15222 0.4 ELF3 AHR SP2 ZNF398 GABPA ZKSCAN1 ZNF335 GLIS2 ZBTB48 POLR2A PIR48117 GC20P046317
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR48117 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48117 Gene

Genomic Locations for PIR48117 Gene
chr20:46,358,594-46,358,623
(GRCh38/hg38)
Size:
30 bases
Orientation:
Minus strand
chr20:44,987,233-44,987,262
(GRCh37/hg19)
Size:
30 bases
Orientation:
Minus strand

Genomic View for PIR48117 Gene

Genes around PIR48117 on UCSC Golden Path with GeneCards custom track

PIR48117 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48117 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48117 Gene

Function for PIR48117 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48117 Gene

Localization for PIR48117 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48117 Gene

Pathways & Interactions for PIR48117 Gene

SuperPathways for PIR48117 Gene

No Data Available

Interacting Proteins for PIR48117 Gene

Gene Ontology (GO) - Biological Process for PIR48117 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48117 Gene

Drugs & Compounds for PIR48117 Gene

No Compound Related Data Available

Transcripts for PIR48117 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48117 Gene

No ASD Table

Relevant External Links for PIR48117 Gene

GeneLoc Exon Structure for
PIR48117

No data available for mRNA/cDNA for PIR48117 Gene

Expression for PIR48117 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48117 Gene

Orthologs for PIR48117 Gene

No data available for Orthologs and Evolution for PIR48117 Gene

Paralogs for PIR48117 Gene

No data available for Paralogs for PIR48117 Gene

Variants for PIR48117 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48117 Gene

Disorders for PIR48117 Gene

No disorders were found for PIR48117 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48117 Gene

Publications for PIR48117 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48117 Gene

Sources for PIR48117 Gene

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