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Aliases for PIR48099 Gene

Subcategory (RNA class) for PIR48099 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR48099 Gene

No Aliases found

ORGUL Members for PIR48099 Gene

Previous GeneCards Identifiers for PIR48099 Gene

  • GC19M045919

No data available for External Ids for PIR48099 Gene

Summaries for PIR48099 Gene

GeneCards Summary for PIR48099 Gene

PIR48099 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48099 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48099 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48099 Gene

Genomics for PIR48099 Gene

GeneHancer (GH) Regulatory Elements for PIR48099 Gene

Promoters and enhancers for PIR48099 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J045422 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 0.4 -9.6 -9569 3.3 CLOCK MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 E2F8 ZNF143 SP3 ERCC1 ZNF180 CCDC61 CLASRP FBXO46 ENSG00000269148 SYMPK ENSG00000268810 BLOC1S3 QPCTL
GH19J045418 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.7 -4.9 -4909 2 HDGF PKNOX1 STAT5A BATF IRF4 EGR1 SCRT2 ZNF207 ZNF143 ETV6 CD3EAP CBLC PIR48099 MIR6088 ERCC1
GH19J045427 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -13.8 -13841 3.1 HDGF SMAD1 ARNT ARID4B SIN3A ZNF766 ZNF207 ZNF143 FOS REST ZNF180 CCDC61 CLASRP ENSG00000269148 CD3EAP ENSG00000268810 FBXO46 SYMPK QPCTL ERCC1
GH19J045430 Enhancer 0.8 ENCODE dbSUPER 0.4 -16.2 -16185 0.8 SOX6 BHLHE40 CEBPB CBFA2T3 ZNF335 ATF4 ZNF318 POLR2A CEBPA ATF7 ERCC1 CD3EAP MIR6088 PIR48099
GH19J045423 Enhancer 0.7 ENCODE dbSUPER 0.4 -7.3 -7346 0.2 HDGF ZFHX2 ZNF189 IKZF1 ZNF623 EGR2 PIR48099 MIR6088 ERCC1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR48099 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48099 Gene

Genomic Locations for PIR48099 Gene
chr19:45,414,864-45,414,892
(GRCh38/hg38)
Size:
29 bases
Orientation:
Minus strand
chr19:45,918,122-45,918,150
(GRCh37/hg19)
Size:
29 bases
Orientation:
Minus strand

Genomic View for PIR48099 Gene

Genes around PIR48099 on UCSC Golden Path with GeneCards custom track

PIR48099 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48099 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48099 Gene

Function for PIR48099 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48099 Gene

Localization for PIR48099 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48099 Gene

Pathways & Interactions for PIR48099 Gene

SuperPathways for PIR48099 Gene

No Data Available

Interacting Proteins for PIR48099 Gene

Gene Ontology (GO) - Biological Process for PIR48099 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48099 Gene

Drugs & Compounds for PIR48099 Gene

No Compound Related Data Available

Transcripts for PIR48099 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48099 Gene

No ASD Table

Relevant External Links for PIR48099 Gene

GeneLoc Exon Structure for
PIR48099

No data available for mRNA/cDNA for PIR48099 Gene

Expression for PIR48099 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48099 Gene

Orthologs for PIR48099 Gene

No data available for Orthologs and Evolution for PIR48099 Gene

Paralogs for PIR48099 Gene

No data available for Paralogs for PIR48099 Gene

Variants for PIR48099 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48099 Gene

Disorders for PIR48099 Gene

No disorders were found for PIR48099 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48099 Gene

Publications for PIR48099 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48099 Gene

Sources for PIR48099 Gene

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