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Aliases for PIR48090 Gene

Subcategory (RNA class) for PIR48090 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR48090 Gene

No Aliases found

ORGUL Members for PIR48090 Gene

Previous GeneCards Identifiers for PIR48090 Gene

  • GC18P020798

No data available for External Ids for PIR48090 Gene

Summaries for PIR48090 Gene

GeneCards Summary for PIR48090 Gene

PIR48090 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48090 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48090 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48090 Gene

Genomics for PIR48090 Gene

GeneHancer (GH) Regulatory Elements for PIR48090 Gene

Promoters and enhancers for PIR48090 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J023218 Enhancer 0.3 dbSUPER 650.7 +1.4 1368 3.6 ZKSCAN1 PIR48090 CABLES1 TMEM241 GC18M023230
GH18J023224 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +9.6 9551 8.6 HDGF PKNOX1 ATF1 SMAD1 YBX1 IRF4 ZNF121 ZNF766 ZNF207 ZNF143 CABLES1 TMEM241 NPC1 RMC1 RBBP8 PIR48090 GC18M023230
GH18J023236 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +19.3 19299 2.5 RB1 BATF KLF5 IRF4 RAD21 YY1 ZNF143 ATF7 ETV6 BCLAF1 GC18M023230 RMC1 TMEM241 PIR48090 CABLES1
GH18J023223 Enhancer 0.3 dbSUPER 0.7 +4.8 4841 0.6 IKZF2 CABLES1 PIR48090 GC18M023230 TMEM241
GH18J023207 Enhancer 0.5 dbSUPER 0.4 -11.0 -10952 1 CTCF ZNF143 ZFP36 RAD21 PIR42331 CABLES1 PIR48090 TMEM241
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR48090 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48090 Gene

Genomic Locations for PIR48090 Gene
chr18:23,218,937-23,218,963
(GRCh38/hg38)
Size:
27 bases
Orientation:
Plus strand
chr18:20,798,901-20,798,927
(GRCh37/hg19)
Size:
27 bases
Orientation:
Plus strand

Genomic View for PIR48090 Gene

Genes around PIR48090 on UCSC Golden Path with GeneCards custom track

PIR48090 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48090 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48090 Gene

Function for PIR48090 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48090 Gene

Localization for PIR48090 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48090 Gene

Pathways & Interactions for PIR48090 Gene

SuperPathways for PIR48090 Gene

No Data Available

Interacting Proteins for PIR48090 Gene

Gene Ontology (GO) - Biological Process for PIR48090 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48090 Gene

Drugs & Compounds for PIR48090 Gene

No Compound Related Data Available

Transcripts for PIR48090 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48090 Gene

No ASD Table

Relevant External Links for PIR48090 Gene

GeneLoc Exon Structure for
PIR48090

No data available for mRNA/cDNA for PIR48090 Gene

Expression for PIR48090 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48090 Gene

Orthologs for PIR48090 Gene

No data available for Orthologs and Evolution for PIR48090 Gene

Paralogs for PIR48090 Gene

No data available for Paralogs for PIR48090 Gene

Variants for PIR48090 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48090 Gene

Disorders for PIR48090 Gene

No disorders were found for PIR48090 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48090 Gene

Publications for PIR48090 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48090 Gene

Sources for PIR48090 Gene

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