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Aliases for PIR48083 Gene

Subcategory (RNA class) for PIR48083 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR48083 Gene

No Aliases found

ORGUL Members for PIR48083 Gene

No data available for External Ids for PIR48083 Gene

Summaries for PIR48083 Gene

GeneCards Summary for PIR48083 Gene

PIR48083 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48083 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48083 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48083 Gene

Genomics for PIR48083 Gene

GeneHancer (GH) Regulatory Elements for PIR48083 Gene

Promoters and enhancers for PIR48083 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J045549 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 650.7 +1.1 1148 5.7 HDGF PKNOX1 ATF1 IRF4 TCF12 GLIS2 GATA2 ARID2 ATF7 FOS PIR48083 LARS2 LIMD1 SACM1L
GH03J045544 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -4.9 -4885 5.3 HDGF FOXA2 PKNOX1 ATF1 YY1 ARID2 ZNF143 ATF7 RXRA REST LARS2 LARS2-AS1 LIMD1 PIR48083
GH03J045537 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 -13.3 -13316 1.7 RXRA MAX REST ZIC2 RAD21 NR2F2 YY1 SP1 EGR1 POLR2A LARS2 SACM1L LIMD1-AS1 PIR48083 LARS2-AS1
GH03J045511 Enhancer 0.6 ENCODE 0.3 -39.9 -39900 0.2 CTCF ZNF654 DACH1 TRIM22 ZNF384 REST RAD21 CC2D1A NFIC SMC3 LIMD1 LARS2-AS1 PIR48083 LARS2
GH03J045540 Enhancer 0.4 dbSUPER 0.4 -9.8 -9804 1.7 DACH1 MNT LARS2 LARS2-AS1 LIMD1-AS1 SACM1L PIR48083
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR48083 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48083 Gene

Genomic Locations for PIR48083 Gene
chr3:45,551,584-45,551,612
(GRCh38/hg38)
Size:
29 bases
Orientation:
Plus strand
chr3:45,593,076-45,593,104
(GRCh37/hg19)
Size:
29 bases
Orientation:
Plus strand

Genomic View for PIR48083 Gene

Genes around PIR48083 on UCSC Golden Path with GeneCards custom track

PIR48083 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48083 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48083 Gene

Function for PIR48083 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48083 Gene

Localization for PIR48083 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48083 Gene

Pathways & Interactions for PIR48083 Gene

SuperPathways for PIR48083 Gene

No Data Available

Interacting Proteins for PIR48083 Gene

Gene Ontology (GO) - Biological Process for PIR48083 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48083 Gene

Drugs & Compounds for PIR48083 Gene

No Compound Related Data Available

Transcripts for PIR48083 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48083 Gene

No ASD Table

Relevant External Links for PIR48083 Gene

GeneLoc Exon Structure for
PIR48083

No data available for mRNA/cDNA for PIR48083 Gene

Expression for PIR48083 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48083 Gene

Orthologs for PIR48083 Gene

No data available for Orthologs and Evolution for PIR48083 Gene

Paralogs for PIR48083 Gene

No data available for Paralogs for PIR48083 Gene

Variants for PIR48083 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48083 Gene

Disorders for PIR48083 Gene

No disorders were found for PIR48083 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48083 Gene

Publications for PIR48083 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48083 Gene

Sources for PIR48083 Gene

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