Free for academic non-profit institutions. Other users need a Commercial license

Aliases for PIR48062 Gene

Subcategory (RNA class) for PIR48062 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR48062 Gene

No Aliases found

ORGUL Members for PIR48062 Gene

Previous GeneCards Identifiers for PIR48062 Gene

  • GC22P045724

No data available for External Ids for PIR48062 Gene

Summaries for PIR48062 Gene

GeneCards Summary for PIR48062 Gene

PIR48062 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48062 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48062 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48062 Gene

Genomics for PIR48062 Gene

GeneHancer (GH) Regulatory Elements for PIR48062 Gene

Promoters and enhancers for PIR48062 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J045328 Enhancer 0.6 ENCODE 650.7 +1.1 1123 1.8 NFIA RXRA HLF MAX REST GABPA YY1 SP1 NFIC EGR1 PIR54916 PIR48062 FAM118A GC22M044704 GC22P045074 GC22M045121
GH22J045336 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 +8.7 8677 1.9 SP1 RXRA MAX MYC NR2F2 RIBC2 FAM118A SMC1B UPK3A TTC38 PIR48062 GC22M044704 GC22P045074 GC22M045121
GH22J045334 Enhancer 0.6 ENCODE 0.4 +6.7 6736 0.8 CTCF RXRA MAX REST RAD21 YY1 SP1 JUND EGR1 HNF4A FAM118A RIBC2 SMC1B UPK3A PIR48062 GC22M044704 GC22P045074 GC22M045121
GH22J045341 Enhancer 0.4 ENCODE dbSUPER 0.4 +13.4 13365 1.3 FAM118A RIBC2 SMC1B UPK3A LINC01589 PIR48062 GC22M044704 GC22M045121 GC22P045074
GH22J045333 Enhancer 0.2 ENCODE 0.4 +5.8 5784 0.5 FAM118A UPK3A RIBC2 SMC1B PIR48062 GC22M044704 GC22P045074 GC22M045121
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR48062 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48062 Gene

Genomic Locations for PIR48062 Gene
chr22:45,328,368-45,328,395
(GRCh38/hg38)
Size:
28 bases
Orientation:
Plus strand
chr22:45,724,249-45,724,276
(GRCh37/hg19)
Size:
28 bases
Orientation:
Plus strand

Genomic View for PIR48062 Gene

Genes around PIR48062 on UCSC Golden Path with GeneCards custom track

PIR48062 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48062 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48062 Gene

Function for PIR48062 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48062 Gene

Localization for PIR48062 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48062 Gene

Pathways & Interactions for PIR48062 Gene

SuperPathways for PIR48062 Gene

No Data Available

Interacting Proteins for PIR48062 Gene

Gene Ontology (GO) - Biological Process for PIR48062 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48062 Gene

Drugs & Compounds for PIR48062 Gene

No Compound Related Data Available

Transcripts for PIR48062 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48062 Gene

No ASD Table

Relevant External Links for PIR48062 Gene

GeneLoc Exon Structure for
PIR48062

No data available for mRNA/cDNA for PIR48062 Gene

Expression for PIR48062 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48062 Gene

Orthologs for PIR48062 Gene

No data available for Orthologs and Evolution for PIR48062 Gene

Paralogs for PIR48062 Gene

No data available for Paralogs for PIR48062 Gene

Variants for PIR48062 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48062 Gene

Disorders for PIR48062 Gene

No disorders were found for PIR48062 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48062 Gene

Publications for PIR48062 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48062 Gene

Sources for PIR48062 Gene

Content
Loading form....