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Aliases for PIR48020 Gene

Subcategory (RNA class) for PIR48020 Gene

piRNA

Quality Score for this RNA gene is

24

Aliases for PIR48020 Gene

No Aliases found

ORGUL Members for PIR48020 Gene

Previous GeneCards Identifiers for PIR48020 Gene

  • GC13P052604

No data available for External Ids for PIR48020 Gene

Summaries for PIR48020 Gene

GeneCards Summary for PIR48020 Gene

PIR48020 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48020 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for PIR48020

Additional gene information for PIR48020 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48020 Gene

Genomics for PIR48020 Gene

GeneHancer (GH) Regulatory Elements for PIR48020 Gene

Promoters and enhancers for PIR48020 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J052028 Promoter 0.5 EPDnew 650.7 -1.5 -1548 0.1 GC13P052032 PIR48020 UTP14C ALG11
GH13J052029 Promoter 0.5 EPDnew 650.7 -0.3 -271 0.1 GC13P052032 PIR48020 UTP14C NEK3 NEK5 ALG11
GH13J052030 Promoter 0.5 EPDnew 650.7 -0.8 -775 0.1 GC13P052032 PIR48020 UTP14C ATP7B NEK5 ALG11
GH13J052127 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 0.2 +98.7 98651 2.1 PKNOX1 ARID4B SIN3A DMAP1 ZNF2 ZNF48 GLIS2 ARID2 ZNF143 ATF7 LOC101929657 NEK5 NEK3 TPTE2P2 ALG11 GC13P052032 PIR48020
GH13J052070 Enhancer 0.9 Ensembl ENCODE 0.3 +41.1 41098 0.4 CTCF ATF1 FOXA2 JUN ARID4B ZNF48 RAD21 FOSL1 FOXK2 VEZF1 ATP7B NEK5 ALG11 UTP14C PIR48020 GC13P052032 LOC101929657
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR48020 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48020 Gene

Genomic Locations for PIR48020 Gene
chr13:52,029,903-52,029,934
(GRCh38/hg38)
Size:
32 bases
Orientation:
Plus strand
chr13:52,604,039-52,604,070
(GRCh37/hg19)
Size:
32 bases
Orientation:
Plus strand

Genomic View for PIR48020 Gene

Genes around PIR48020 on UCSC Golden Path with GeneCards custom track

PIR48020 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48020 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR48020 Gene

ORGUL Member Location for PIR48020 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48020 Gene

Function for PIR48020 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48020 Gene

Localization for PIR48020 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48020 Gene

Pathways & Interactions for PIR48020 Gene

SuperPathways for PIR48020 Gene

No Data Available

Interacting Proteins for PIR48020 Gene

Gene Ontology (GO) - Biological Process for PIR48020 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48020 Gene

Drugs & Compounds for PIR48020 Gene

No Compound Related Data Available

Transcripts for PIR48020 Gene

fRNAdb Secondary structures for PIR48020 Gene

  • FR393888

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48020 Gene

No ASD Table

Relevant External Links for PIR48020 Gene

GeneLoc Exon Structure for
PIR48020

No data available for mRNA/cDNA for PIR48020 Gene

Expression for PIR48020 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48020 Gene

Orthologs for PIR48020 Gene

No data available for Orthologs and Evolution for PIR48020 Gene

Paralogs for PIR48020 Gene

No data available for Paralogs for PIR48020 Gene

Variants for PIR48020 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48020 Gene

Disorders for PIR48020 Gene

No disorders were found for PIR48020 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48020 Gene

Publications for PIR48020 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48020 Gene

Sources for PIR48020 Gene

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