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Aliases for PIR48003 Gene

Subcategory (RNA class) for PIR48003 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR48003 Gene

No Aliases found

ORGUL Members for PIR48003 Gene

No data available for External Ids for PIR48003 Gene

Summaries for PIR48003 Gene

GeneCards Summary for PIR48003 Gene

PIR48003 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR48003 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR48003 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR48003 Gene

Genomics for PIR48003 Gene

GeneHancer (GH) Regulatory Elements for PIR48003 Gene

Promoters and enhancers for PIR48003 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J025233 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 0.4 -8.1 -8065 3.6 HDGF FOXA2 PKNOX1 SMAD1 ARNT ARID4B SIN3A ZNF2 YY1 POLR2B PI4K2B LOC105374535 ANAPC4 DHX15 ZCCHC4 PIR48003 ENSG00000281028
GH04J025240 Enhancer 0.9 Ensembl ENCODE 0.7 -2.1 -2131 0.7 BCOR HDGF PKNOX1 TAL1 YBX1 TCF12 ZNF316 NCOR1 CBFA2T2 TRIM24 ANAPC4 PIR48003 PI4K2B ENSG00000281028
GH04J025241 Enhancer 0.2 Ensembl 0.7 -2.9 -2863 0.4 PIR48003 PI4K2B ENSG00000281028
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR48003 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR48003 Gene

Genomic Locations for PIR48003 Gene
chr4:25,243,064-25,243,091
(GRCh38/hg38)
Size:
28 bases
Orientation:
Plus strand
chr4:25,244,686-25,244,713
(GRCh37/hg19)
Size:
28 bases
Orientation:
Plus strand

Genomic View for PIR48003 Gene

Genes around PIR48003 on UCSC Golden Path with GeneCards custom track

PIR48003 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR48003 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR48003 Gene

Function for PIR48003 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR48003 Gene

Localization for PIR48003 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR48003 Gene

Pathways & Interactions for PIR48003 Gene

SuperPathways for PIR48003 Gene

No Data Available

Interacting Proteins for PIR48003 Gene

Gene Ontology (GO) - Biological Process for PIR48003 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR48003 Gene

Drugs & Compounds for PIR48003 Gene

No Compound Related Data Available

Transcripts for PIR48003 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR48003 Gene

No ASD Table

Relevant External Links for PIR48003 Gene

GeneLoc Exon Structure for
PIR48003

No data available for mRNA/cDNA for PIR48003 Gene

Expression for PIR48003 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR48003 Gene

Orthologs for PIR48003 Gene

No data available for Orthologs and Evolution for PIR48003 Gene

Paralogs for PIR48003 Gene

No data available for Paralogs for PIR48003 Gene

Variants for PIR48003 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR48003 Gene

Disorders for PIR48003 Gene

No disorders were found for PIR48003 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR48003 Gene

Publications for PIR48003 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR48003 Gene

Sources for PIR48003 Gene

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