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Aliases for PIR47973 Gene

Subcategory (RNA class) for PIR47973 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR47973 Gene

No Aliases found

ORGUL Members for PIR47973 Gene

Previous GeneCards Identifiers for PIR47973 Gene

  • GC17M048191

No data available for External Ids for PIR47973 Gene

Summaries for PIR47973 Gene

GeneCards Summary for PIR47973 Gene

PIR47973 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR47973 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR47973 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR47973 Gene

Genomics for PIR47973 Gene

GeneHancer (GH) Regulatory Elements for PIR47973 Gene

Promoters and enhancers for PIR47973 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J050115 Enhancer 1 ENCODE dbSUPER 650.7 -1.0 -1036 0.2 ARID4B MZF1 SIN3A ZNF2 RAD21 ZNF366 ZNF143 RCOR1 CREM MIXL1 PIR47973 SGCA ENSG00000253730 HILS1 ENSG00000248172 DLX3 ACSF2 CHAD SAMD14
GH17J050114 Enhancer 0.7 ENCODE dbSUPER 650.7 -0.2 -166 0.2 HIC1 NFIC NFIA NFIB ZIC2 BCL11B PIR47973 ENSG00000253730 SGCA HILS1 DLX3 ENSG00000248172 ACSF2 CHAD SAMD14
GH17J050107 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.7 +3.3 3325 6.4 ELF3 ARID4B KLF17 THRB ZNF48 RAD21 TCF12 EGR1 FOS RXRA PDK2 ENSG00000253730 SGCA HILS1 ENSG00000248172 DLX3 SAMD14 ACSF2 CHAD PICART1
GH17J050127 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE 0.4 -15.3 -15286 3.2 ZSCAN4 KLF14 ZNF48 ZNF335 TCF12 GLIS2 GATA2 EGR1 ZNF366 ZNF143 SAMD14 LUC7L3 LOC105371824 MYCBPAP SGCA PDK2 PIR47973
GH17J050116 Enhancer 1 Ensembl ENCODE 0.7 -3.7 -3676 1.7 ATF1 RB1 ARID4B SIN3A ZNF48 RAD21 ZNF614 ZNF143 CREM REST PDK2 PIR47973 SAMD14
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR47973 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR47973 Gene

Genomic Locations for PIR47973 Gene
chr17:50,114,019-50,114,046
(GRCh38/hg38)
Size:
28 bases
Orientation:
Minus strand
chr17:48,191,383-48,191,410
(GRCh37/hg19)
Size:
28 bases
Orientation:
Minus strand

Genomic View for PIR47973 Gene

Genes around PIR47973 on UCSC Golden Path with GeneCards custom track

PIR47973 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR47973 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR47973 Gene

Function for PIR47973 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR47973 Gene

Localization for PIR47973 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR47973 Gene

Pathways & Interactions for PIR47973 Gene

SuperPathways for PIR47973 Gene

No Data Available

Interacting Proteins for PIR47973 Gene

Gene Ontology (GO) - Biological Process for PIR47973 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR47973 Gene

Drugs & Compounds for PIR47973 Gene

No Compound Related Data Available

Transcripts for PIR47973 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR47973 Gene

No ASD Table

Relevant External Links for PIR47973 Gene

GeneLoc Exon Structure for
PIR47973

No data available for mRNA/cDNA for PIR47973 Gene

Expression for PIR47973 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR47973 Gene

Orthologs for PIR47973 Gene

No data available for Orthologs and Evolution for PIR47973 Gene

Paralogs for PIR47973 Gene

No data available for Paralogs for PIR47973 Gene

Variants for PIR47973 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR47973 Gene

Disorders for PIR47973 Gene

No disorders were found for PIR47973 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR47973 Gene

Publications for PIR47973 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR47973 Gene

Sources for PIR47973 Gene

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