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Aliases for PIR47969 Gene

Subcategory (RNA class) for PIR47969 Gene

piRNA

Quality Score for this RNA gene is

19.2

Aliases for PIR47969 Gene

No Aliases found

ORGUL Members for PIR47969 Gene

Previous GeneCards Identifiers for PIR47969 Gene

  • GC01M041092

No data available for External Ids for PIR47969 Gene

Summaries for PIR47969 Gene

GeneCards Summary for PIR47969 Gene

PIR47969 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR47969 Gene - the ORGUL cluster for this gene includes several descriptions:

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for PIR47969

Additional gene information for PIR47969 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR47969 Gene

Genomics for PIR47969 Gene

GeneHancer (GH) Regulatory Elements for PIR47969 Gene

Promoters and enhancers for PIR47969 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J040628 Enhancer 0.7 ENCODE 0.7 -2.7 -2679 2 CTCF EBF1 BATF KLF5 IRF4 RELA ATF7 ETV6 IKZF2 CREM LOC105378672 PIR47969 LOC105378675 RIMS3
GH01J040612 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +14.0 14042 0.7 ELF3 RB1 ZNF2 IRF4 RAD21 ARID2 ZNF143 BCLAF1 CREM DEK NFYC MIR30C1 MIR30E PIR47969 GTF2F2P2
GH01J040620 Enhancer 0.6 dbSUPER 0.7 +3.1 3092 6.8 MEIS2 CTCF PKNOX1 ZMYM3 RAD21 FOSL1 ZNF143 SMC3 FOS LOC105378674 ZFP69 LOC105378672 PIR47969 GTF2F2P2 RIMS3
GH01J040653 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -27.5 -27540 0.9 AFF1 ZNF740 ZSCAN4 SIN3A MIER2 REST CDC5L ZNF148 ZFHX2 POLR2A NFYC MIR30C1 MIR30E LOC105378672 RIMS3 LOC105378675 PIR47969
GH01J040634 Enhancer 0.9 ENCODE 0.4 -7.5 -7462 0.2 SMAD1 ATF1 ARNT TCF12 GATA2 ATF7 NCOA1 REST MBD2 SMARCA4 PIR47969 LOC105378675 RIMS3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR47969 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR47969 Gene

Genomic Locations for PIR47969 Gene
chr1:40,626,672-40,626,702
(GRCh38/hg38)
Size:
31 bases
Orientation:
Minus strand
chr1:41,092,344-41,092,374
(GRCh37/hg19)
Size:
31 bases
Orientation:
Minus strand

Genomic View for PIR47969 Gene

Genes around PIR47969 on UCSC Golden Path with GeneCards custom track

PIR47969 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR47969 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR47969 Gene

ORGUL Member Location for PIR47969 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR47969 Gene

Function for PIR47969 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR47969 Gene

Localization for PIR47969 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR47969 Gene

Pathways & Interactions for PIR47969 Gene

SuperPathways for PIR47969 Gene

No Data Available

Interacting Proteins for PIR47969 Gene

Gene Ontology (GO) - Biological Process for PIR47969 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR47969 Gene

Drugs & Compounds for PIR47969 Gene

No Compound Related Data Available

Transcripts for PIR47969 Gene

fRNAdb Secondary structures for PIR47969 Gene

  • FR176669
  • FR250728

Alternative Splicing Database (ASD) splice patterns (SP) for PIR47969 Gene

No ASD Table

Relevant External Links for PIR47969 Gene

GeneLoc Exon Structure for
PIR47969

No data available for mRNA/cDNA for PIR47969 Gene

Expression for PIR47969 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR47969 Gene

Orthologs for PIR47969 Gene

No data available for Orthologs and Evolution for PIR47969 Gene

Paralogs for PIR47969 Gene

No data available for Paralogs for PIR47969 Gene

Variants for PIR47969 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR47969 Gene

Disorders for PIR47969 Gene

No disorders were found for PIR47969 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR47969 Gene

Publications for PIR47969 Gene

  1. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen JS … Haussler D (PLoS computational biology 2006) 1
  2. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  3. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR47969 Gene

Sources for PIR47969 Gene

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