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Aliases for PIR47953 Gene

Subcategory (RNA class) for PIR47953 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR47953 Gene

No Aliases found

ORGUL Members for PIR47953 Gene

Previous GeneCards Identifiers for PIR47953 Gene

  • GC14M090778
  • GC14M090320
  • GC14M090485
  • GC14M090595
  • GC14M090599
  • GC14M090820
  • GC14M091094
  • GC14M091387
  • GC14M091673

No data available for External Ids for PIR47953 Gene

Summaries for PIR47953 Gene

GeneCards Summary for PIR47953 Gene

PIR47953 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR47953 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR47953 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR47953 Gene

Genomics for PIR47953 Gene

GeneHancer (GH) Regulatory Elements for PIR47953 Gene

Promoters and enhancers for PIR47953 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14J090330 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 0.4 -19.2 -19230 2.1 PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 POLR2B ZNF766 NRDE2 PSMC1 PIR47953
GH14J090300 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +9.3 9275 5.3 FOXA2 MLX ARID4B RAD21 RARA YY1 ZNF366 THAP11 MIXL1 ZNF654 NRDE2 CALM1 KCNK13 PIR47953 PIR41665
GH14J090298 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +13.1 13095 1.8 MAX MAFG ZNF316 POLR2A NFE2 MAFK EMSY MYC NRDE2 CALM1 KCNK13 PIR41665 PIR47953
GH14J090307 Enhancer 0.6 dbSUPER 0.7 +3.5 3451 2.7 CTCF KLF1 HLF CEBPB CEBPG ZFHX2 ATF4 ATF3 MAFK EGR2 NRDE2 CALM1 PIR47953 PIR41665
GH14J090296 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 +16.2 16211 1.4 POLR2A MAX MYC ZBTB40 PSMC1 NRDE2 KCNK13 PIR41665 PIR47953
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR47953 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR47953 Gene

Genomic Locations for PIR47953 Gene
chr14:90,312,490-90,312,516
(GRCh38/hg38)
Size:
27 bases
Orientation:
Minus strand
chr14:90,778,834-90,778,860
(GRCh37/hg19)
Size:
27 bases
Orientation:
Minus strand

Genomic View for PIR47953 Gene

Genes around PIR47953 on UCSC Golden Path with GeneCards custom track

PIR47953 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR47953 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR47953 Gene

Function for PIR47953 Gene

Phenotypes From GWAS Catalog for PIR47953 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR47953 Gene

Localization for PIR47953 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR47953 Gene

Pathways & Interactions for PIR47953 Gene

SuperPathways for PIR47953 Gene

No Data Available

Interacting Proteins for PIR47953 Gene

Gene Ontology (GO) - Biological Process for PIR47953 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR47953 Gene

Drugs & Compounds for PIR47953 Gene

No Compound Related Data Available

Transcripts for PIR47953 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR47953 Gene

No ASD Table

Relevant External Links for PIR47953 Gene

GeneLoc Exon Structure for
PIR47953

No data available for mRNA/cDNA for PIR47953 Gene

Expression for PIR47953 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR47953 Gene

Orthologs for PIR47953 Gene

No data available for Orthologs and Evolution for PIR47953 Gene

Paralogs for PIR47953 Gene

No data available for Paralogs for PIR47953 Gene

Variants for PIR47953 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR47953 Gene

Disorders for PIR47953 Gene

No disorders were found for PIR47953 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR47953 Gene

Publications for PIR47953 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR47953 Gene

Sources for PIR47953 Gene

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