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Aliases for PIR47941 Gene

Subcategory (RNA class) for PIR47941 Gene

piRNA

Quality Score for this RNA gene is

24

Aliases for PIR47941 Gene

No Aliases found

ORGUL Members for PIR47941 Gene

Previous GeneCards Identifiers for PIR47941 Gene

  • GC09P131891

No data available for External Ids for PIR47941 Gene

Summaries for PIR47941 Gene

GeneCards Summary for PIR47941 Gene

PIR47941 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR47941 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for PIR47941

Additional gene information for PIR47941 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR47941 Gene

Genomics for PIR47941 Gene

GeneHancer (GH) Regulatory Elements for PIR47941 Gene

Promoters and enhancers for PIR47941 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J129128 Enhancer 0.3 dbSUPER 650.7 -0.1 -52 1 MZF1 GC09P129130 PIR47941 CRAT ENSG00000234055 NTMT1 C9orf50 PIR54195 PTPA
GH09J129131 Enhancer 1.1 ENCODE dbSUPER 0.7 +2.8 2790 0.7 HDGF SMAD1 RB1 KLF17 SIN3A ZNF2 KLF5 IRF4 BRCA1 ZNF48 CRAT ENSG00000234055 URM1 NTMT1 C9orf50 NUP188 GC09P129130 PIR47941 GC09P129138 PIR48172
GH09J129124 Enhancer 0.9 ENCODE dbSUPER 0.7 -2.8 -2803 3.2 JUN SIN3A EBF1 ZIC2 BRCA1 POLR3A POLR2A RUNX3 CBFA2T3 CEBPB CRAT ENSG00000268707 ENSG00000234055 C9orf50 NTMT1 LOC101929314 GC09P129130 PIR54195 PIR47941 PTPA
GH09J129132 Enhancer 0.6 ENCODE dbSUPER 0.7 +4.5 4509 1.6 ZNF664 ZNF16 TCF7L2 CRAT CIZ1 NUP188 GOLGA2 NTMT1 C9orf50 CERCAM GC09P129130 GC09P129138 PIR47941
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR47941 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR47941 Gene

Genomic Locations for PIR47941 Gene
chr9:129,129,018-129,129,049
(GRCh38/hg38)
Size:
32 bases
Orientation:
Plus strand
chr9:131,891,297-131,891,328
(GRCh37/hg19)
Size:
32 bases
Orientation:
Plus strand

Genomic View for PIR47941 Gene

Genes around PIR47941 on UCSC Golden Path with GeneCards custom track

PIR47941 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR47941 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR47941 Gene

ORGUL Member Location for PIR47941 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR47941 Gene

Function for PIR47941 Gene

Phenotypes From GWAS Catalog for PIR47941 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR47941 Gene

Localization for PIR47941 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR47941 Gene

Pathways & Interactions for PIR47941 Gene

SuperPathways for PIR47941 Gene

No Data Available

Interacting Proteins for PIR47941 Gene

Gene Ontology (GO) - Biological Process for PIR47941 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR47941 Gene

Drugs & Compounds for PIR47941 Gene

No Compound Related Data Available

Transcripts for PIR47941 Gene

fRNAdb Secondary structures for PIR47941 Gene

  • FR249598

Alternative Splicing Database (ASD) splice patterns (SP) for PIR47941 Gene

No ASD Table

Relevant External Links for PIR47941 Gene

GeneLoc Exon Structure for
PIR47941

No data available for mRNA/cDNA for PIR47941 Gene

Expression for PIR47941 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR47941 Gene

Orthologs for PIR47941 Gene

No data available for Orthologs and Evolution for PIR47941 Gene

Paralogs for PIR47941 Gene

No data available for Paralogs for PIR47941 Gene

Variants for PIR47941 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR47941 Gene

Disorders for PIR47941 Gene

No disorders were found for PIR47941 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR47941 Gene

Publications for PIR47941 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR47941 Gene

Sources for PIR47941 Gene

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