Free for academic non-profit institutions. Other users need a Commercial license

Aliases for PIR47909 Gene

Subcategory (RNA class) for PIR47909 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR47909 Gene

No Aliases found

ORGUL Members for PIR47909 Gene

Previous GeneCards Identifiers for PIR47909 Gene

  • GC02P232125
  • GC02P232128
  • GC02P232132
  • GC02P232137
  • GC02P232141
  • GC02P231257
  • GC02P231259
  • GC02P231260
  • GC02P231261
  • GC02P231262
  • GC02P231263
  • GC02P231264

No data available for External Ids for PIR47909 Gene

Summaries for PIR47909 Gene

GeneCards Summary for PIR47909 Gene

PIR47909 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR47909 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR47909 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR47909 Gene

Genomics for PIR47909 Gene

GeneHancer (GH) Regulatory Elements for PIR47909 Gene

Promoters and enhancers for PIR47909 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I231256 Promoter 0.7 Ensembl 550.8 +0.1 103 0.4 CEBPB CEBPG ZBTB33 GC02P231266 GC02P231267 RPS28P4 PIR47909 GC02P231268 GC02P231258 SNORA75 SNORD20 NCL ENSG00000233538
GH02I231296 Enhancer 1 Ensembl ENCODE 0.3 +41.1 41132 0.9 HDGF ELF3 FOXA2 RB1 ARID4B RAD21 ZNF143 FOS IKZF2 RUNX3 GC02P231324 GC02P231267 PIR47909 ARMC9
GH02I231299 Enhancer 0.8 Ensembl ENCODE 0.3 +44.0 44023 1.8 RFX1 ELF1 BATF SP1 BCL11A TARDBP IKZF1 NBN RUNX3 IKZF2 HTR2B SNORA75 SNORD20 SPATA3 SPATA3-AS1 NCL GC02P231324 GC02P231267 PIR47909 ARMC9
GH02I231321 Enhancer 1 FANTOM5 Ensembl ENCODE 0.2 +65.7 65662 1.3 L3MBTL2 MAX REST GABPA POLR2A IKZF1 IKZF2 RUNX3 MYC PTMA GC02P231324 PIR47909 GC02P231267 ARMC9
GH02I231258 Enhancer 0.2 ENCODE 0.8 +2.9 2926 1.1 ARMC9 SNORA75 SNORD20 NCL ENSG00000233538 HTR2B GC02P231267 PIR47909 GC02P231324
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR47909 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR47909 Gene

Genomic Locations for PIR47909 Gene
chr2:231,256,097-231,256,126
(GRCh38/hg38)
Size:
30 bases
Orientation:
Plus strand
chr2:232,120,810-232,120,839
(GRCh37/hg19)

Genomic View for PIR47909 Gene

Genes around PIR47909 on UCSC Golden Path with GeneCards custom track

PIR47909 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR47909 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR47909 Gene

Proteins for PIR47909 Gene

Post-translational modifications for PIR47909 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR47909 Gene

Domains & Families for PIR47909 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR47909 Gene

Function for PIR47909 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR47909 Gene

Localization for PIR47909 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR47909 Gene

Pathways & Interactions for PIR47909 Gene

SuperPathways for PIR47909 Gene

No Data Available

Interacting Proteins for PIR47909 Gene

Gene Ontology (GO) - Biological Process for PIR47909 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR47909 Gene

Drugs & Compounds for PIR47909 Gene

No Compound Related Data Available

Transcripts for PIR47909 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR47909 Gene

No ASD Table

Relevant External Links for PIR47909 Gene

GeneLoc Exon Structure for
PIR47909

No data available for mRNA/cDNA for PIR47909 Gene

Expression for PIR47909 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR47909 Gene

Orthologs for PIR47909 Gene

No data available for Orthologs and Evolution for PIR47909 Gene

Paralogs for PIR47909 Gene

No data available for Paralogs for PIR47909 Gene

Variants for PIR47909 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR47909 Gene

Disorders for PIR47909 Gene

No disorders were found for PIR47909 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR47909 Gene

Publications for PIR47909 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR47909 Gene

Sources for PIR47909 Gene

Content
Loading form....