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Aliases for PIR47890 Gene

Subcategory (RNA class) for PIR47890 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR47890 Gene

No Aliases found

ORGUL Members for PIR47890 Gene

Previous GeneCards Identifiers for PIR47890 Gene

  • GC02P073469

No data available for External Ids for PIR47890 Gene

Summaries for PIR47890 Gene

GeneCards Summary for PIR47890 Gene

PIR47890 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR47890 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR47890 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR47890 Gene

Genomics for PIR47890 Gene

GeneHancer (GH) Regulatory Elements for PIR47890 Gene

Promoters and enhancers for PIR47890 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J073232 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.4 -5.4 -5436 3.9 CLOCK MLX DMAP1 YY1 SLC30A9 ZNF213 ZNF143 ZNF263 SP3 NFYC CCT7 PRADC1 ENSG00000273245 DUSP11 MOB1A FBXO41 TPRKB ALMS1 DGUOK DGUOK-AS1
GH02J073244 Enhancer 0.7 ENCODE 0.7 +4.7 4667 0.6 PKNOX1 NFIB SIN3A GATA3 SCRT2 ZFP91 RCOR1 FOSL2 FOS CHD2 SMYD5 FBXO41 PRADC1 PIR47890 CCT7
GH02J073268 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE 0.3 +29.5 29484 2 GTF2F1 CTCF MXI1 SIN3A YBX1 ZNF335 E2F1 ZNF121 GLIS2 ELK1 FBXO41 SMYD5 PIR47890
GH02J073260 Enhancer 0.8 ENCODE 0.3 +20.7 20719 0.1 BCOR ELF3 CTCF MXI1 USF1 SAP130 ARID4B MAX SIN3A ZIC2 PIR47890 FBXO41
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR47890 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR47890 Gene

Genomic Locations for PIR47890 Gene
chr2:73,239,769-73,239,795
(GRCh38/hg38)
Size:
27 bases
Orientation:
Plus strand
chr2:73,466,897-73,466,923
(GRCh37/hg19)
Size:
27 bases
Orientation:
Plus strand

Genomic View for PIR47890 Gene

Genes around PIR47890 on UCSC Golden Path with GeneCards custom track

PIR47890 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR47890 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR47890 Gene

Function for PIR47890 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR47890 Gene

Localization for PIR47890 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR47890 Gene

Pathways & Interactions for PIR47890 Gene

SuperPathways for PIR47890 Gene

No Data Available

Interacting Proteins for PIR47890 Gene

Gene Ontology (GO) - Biological Process for PIR47890 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR47890 Gene

Drugs & Compounds for PIR47890 Gene

No Compound Related Data Available

Transcripts for PIR47890 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR47890 Gene

No ASD Table

Relevant External Links for PIR47890 Gene

GeneLoc Exon Structure for
PIR47890

No data available for mRNA/cDNA for PIR47890 Gene

Expression for PIR47890 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR47890 Gene

Orthologs for PIR47890 Gene

No data available for Orthologs and Evolution for PIR47890 Gene

Paralogs for PIR47890 Gene

No data available for Paralogs for PIR47890 Gene

Variants for PIR47890 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR47890 Gene

Disorders for PIR47890 Gene

No disorders were found for PIR47890 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR47890 Gene

Publications for PIR47890 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR47890 Gene

Sources for PIR47890 Gene

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