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Aliases for PIR47842 Gene

Subcategory (RNA class) for PIR47842 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR47842 Gene

No Aliases found

ORGUL Members for PIR47842 Gene

Previous GeneCards Identifiers for PIR47842 Gene

  • GC08M042742

No data available for External Ids for PIR47842 Gene

Summaries for PIR47842 Gene

GeneCards Summary for PIR47842 Gene

PIR47842 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR47842 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR47842 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR47842 Gene

Genomics for PIR47842 Gene

GeneHancer (GH) Regulatory Elements for PIR47842 Gene

Promoters and enhancers for PIR47842 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J042893 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 0.4 -8.1 -8077 5.9 PKNOX1 CLOCK FOXA2 ARID4B NEUROD1 SIN3A DMAP1 YY1 POLR2B ZNF766 THAP1 HOOK3 MIR4469 RNF170 FNTA PIR47842
GH08J042890 Enhancer 0.9 Ensembl ENCODE 0.7 -3.8 -3790 1.7 PKNOX1 LEF1 STAT5A EBF1 BMI1 ETV6 ZNF600 IKZF2 RUNX3 CBFB THAP1 HOOK3 MIR4469 PIR47842 RNF170
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR47842 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR47842 Gene

Genomic Locations for PIR47842 Gene
chr8:42,887,840-42,887,868
(GRCh38/hg38)
Size:
29 bases
Orientation:
Minus strand
chr8:42,742,983-42,743,011
(GRCh37/hg19)
Size:
29 bases
Orientation:
Minus strand

Genomic View for PIR47842 Gene

Genes around PIR47842 on UCSC Golden Path with GeneCards custom track

PIR47842 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR47842 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR47842 Gene

Function for PIR47842 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR47842 Gene

Localization for PIR47842 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR47842 Gene

Pathways & Interactions for PIR47842 Gene

SuperPathways for PIR47842 Gene

No Data Available

Interacting Proteins for PIR47842 Gene

Gene Ontology (GO) - Biological Process for PIR47842 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR47842 Gene

Drugs & Compounds for PIR47842 Gene

No Compound Related Data Available

Transcripts for PIR47842 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR47842 Gene

No ASD Table

Relevant External Links for PIR47842 Gene

GeneLoc Exon Structure for
PIR47842

No data available for mRNA/cDNA for PIR47842 Gene

Expression for PIR47842 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR47842 Gene

Orthologs for PIR47842 Gene

No data available for Orthologs and Evolution for PIR47842 Gene

Paralogs for PIR47842 Gene

No data available for Paralogs for PIR47842 Gene

Variants for PIR47842 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR47842 Gene

Disorders for PIR47842 Gene

No disorders were found for PIR47842 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR47842 Gene

Publications for PIR47842 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR47842 Gene

Sources for PIR47842 Gene

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