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Aliases for PIR47838 Gene

Subcategory (RNA class) for PIR47838 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR47838 Gene

No Aliases found

ORGUL Members for PIR47838 Gene

Previous GeneCards Identifiers for PIR47838 Gene

  • GC05P044213

No data available for External Ids for PIR47838 Gene

Summaries for PIR47838 Gene

GeneCards Summary for PIR47838 Gene

PIR47838 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR47838 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR47838 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR47838 Gene

Genomics for PIR47838 Gene

GeneHancer (GH) Regulatory Elements for PIR47838 Gene

Promoters and enhancers for PIR47838 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J089129 Enhancer 0.8 ENCODE 650.7 -0.9 -874 0.2 HDAC1 PKNOX1 RB1 ARNT CHAMP1 TCF12 GATA2 ATF7 CREM ZBTB2 PIR47838 GC05P088942 MEF2C-AS1
GH05J089116 Enhancer 0.7 ENCODE 0.4 -12.9 -12931 1 SMAD1 EBF1 BATF YY1 ZNF316 ATF7 MAFK IKZF2 RUNX3 RXRA PIR47838 GC05P088942 MEF2C-AS1
GH05J089120 Enhancer 0.5 Ensembl 0.4 -9.5 -9452 0.6 ZNF316 CEBPB MAFG MAFK EMSY PIR47838 GC05P088942 MEF2C-AS1
GH05J089069 Enhancer 0.8 ENCODE 0.2 -60.7 -60672 0.9 HDAC1 PKNOX1 ARNT CHAMP1 TCF12 GATA2 CREM CEBPB ZNF592 KLF16 PIR47838 GC05P088942 MEF2C-AS1
GH05J089072 Enhancer 0.7 Ensembl ENCODE 0.2 -57.3 -57279 1.3 PKNOX1 ZNF687 ZNF316 EED EBF1 BCLAF1 RUNX3 PIR47838 GC05P088942 MEF2C-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR47838 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR47838 Gene

Genomic Locations for PIR47838 Gene
chr5:89,130,353-89,130,384
(GRCh38/hg38)
Size:
32 bases
Orientation:
Plus strand
chr5:44,213,085-44,213,116
(GRCh37/hg19)
Size:
32 bases
Orientation:
Plus strand

Genomic View for PIR47838 Gene

Genes around PIR47838 on UCSC Golden Path with GeneCards custom track

PIR47838 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR47838 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR47838 Gene

Function for PIR47838 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR47838 Gene

Localization for PIR47838 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR47838 Gene

Pathways & Interactions for PIR47838 Gene

SuperPathways for PIR47838 Gene

No Data Available

Interacting Proteins for PIR47838 Gene

Gene Ontology (GO) - Biological Process for PIR47838 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR47838 Gene

Drugs & Compounds for PIR47838 Gene

No Compound Related Data Available

Transcripts for PIR47838 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR47838 Gene

No ASD Table

Relevant External Links for PIR47838 Gene

GeneLoc Exon Structure for
PIR47838

No data available for mRNA/cDNA for PIR47838 Gene

Expression for PIR47838 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR47838 Gene

Orthologs for PIR47838 Gene

No data available for Orthologs and Evolution for PIR47838 Gene

Paralogs for PIR47838 Gene

No data available for Paralogs for PIR47838 Gene

Variants for PIR47838 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR47838 Gene

Disorders for PIR47838 Gene

No disorders were found for PIR47838 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR47838 Gene

Publications for PIR47838 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR47838 Gene

Sources for PIR47838 Gene

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