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Aliases for PIR47829 Gene

Subcategory (RNA class) for PIR47829 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR47829 Gene

No Aliases found

ORGUL Members for PIR47829 Gene

Previous GeneCards Identifiers for PIR47829 Gene

  • GC19P041169

No data available for External Ids for PIR47829 Gene

Summaries for PIR47829 Gene

GeneCards Summary for PIR47829 Gene

PIR47829 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR47829 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR47829 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR47829 Gene

Genomics for PIR47829 Gene

GeneHancer (GH) Regulatory Elements for PIR47829 Gene

Promoters and enhancers for PIR47829 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J040662 Enhancer 1.3 Ensembl ENCODE 650.7 +0.5 459 2.8 CLOCK MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF213 ZNF143 SP3 ZC3H11A PIR47829 SNRPA HNRNPUL1 FBL ENSG00000269843 AKT2 CCDC97 ZNF780A ITPKC RAB4B
GH19J040665 Enhancer 1.2 Ensembl ENCODE 0.7 +3.2 3198 1.7 ATF1 ARNT SIN3A TCF12 GATA2 ZFP91 ATF7 FOS YY2 NCOA1 C19orf54 RNU6-195P ZNF546 CYP2G1P RAB4B RAB4B-EGLN2 SNRPA EGLN2 ZNF780B COQ8B
GH19J040686 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.3 +26.3 26311 6 HDGF PKNOX1 SIN3A FEZF1 ZNF2 POLR2B ZNF766 E2F8 ZNF548 KLF13 NUMBL HNRNPUL1 ENSG00000269843 AKT2 SNRPA ZNF780B ZNF546 PSMC4 CCDC97 CYP2G1P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR47829 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR47829 Gene

Genomic Locations for PIR47829 Gene
chr19:40,663,288-40,663,317
(GRCh38/hg38)
Size:
30 bases
Orientation:
Plus strand
chr19:41,169,193-41,169,222
(GRCh37/hg19)
Size:
30 bases
Orientation:
Plus strand

Genomic View for PIR47829 Gene

Genes around PIR47829 on UCSC Golden Path with GeneCards custom track

PIR47829 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR47829 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR47829 Gene

Function for PIR47829 Gene

Phenotypes From GWAS Catalog for PIR47829 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR47829 Gene

Localization for PIR47829 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR47829 Gene

Pathways & Interactions for PIR47829 Gene

SuperPathways for PIR47829 Gene

No Data Available

Interacting Proteins for PIR47829 Gene

Gene Ontology (GO) - Biological Process for PIR47829 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR47829 Gene

Drugs & Compounds for PIR47829 Gene

No Compound Related Data Available

Transcripts for PIR47829 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR47829 Gene

No ASD Table

Relevant External Links for PIR47829 Gene

GeneLoc Exon Structure for
PIR47829

No data available for mRNA/cDNA for PIR47829 Gene

Expression for PIR47829 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR47829 Gene

Orthologs for PIR47829 Gene

No data available for Orthologs and Evolution for PIR47829 Gene

Paralogs for PIR47829 Gene

No data available for Paralogs for PIR47829 Gene

Variants for PIR47829 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR47829 Gene

Disorders for PIR47829 Gene

No disorders were found for PIR47829 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR47829 Gene

Publications for PIR47829 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR47829 Gene

Sources for PIR47829 Gene

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