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Aliases for PIR47826 Gene

Subcategory (RNA class) for PIR47826 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR47826 Gene

No Aliases found

ORGUL Members for PIR47826 Gene

No data available for External Ids for PIR47826 Gene

Summaries for PIR47826 Gene

GeneCards Summary for PIR47826 Gene

PIR47826 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR47826 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR47826 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR47826 Gene

Genomics for PIR47826 Gene

GeneHancer (GH) Regulatory Elements for PIR47826 Gene

Promoters and enhancers for PIR47826 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J053680 Enhancer 0.5 ENCODE 650.7 -0.9 -886 0.2 MXI1 RFX1 POLR2A REST PIR47826 PIR57017 CACNA1D
GH03J053710 Enhancer 0.9 Ensembl ENCODE 0.3 +29.2 29186 0.6 CTCF RB1 IRF3 MAX SIN3A EBF1 CEBPG RAD21 YY1 HIC1 PIR47826 GC03P053782 CACNA1D
GH03J053664 Enhancer 0.6 ENCODE 0.4 -16.1 -16126 0.2 SMARCE1 NCOA3 PKNOX1 DPF2 E2F1 ZNF217 CTBP1 GATA3 JUND TCF7L2 PIR57017 PIR47826 CACNA1D
GH03J053747 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.2 +68.3 68285 2.9 BACH1 EBF1 IRF4 RELA ETS1 EED ATF7 ETV6 IKZF2 SMARCA5 IL17RB SELENOK DCP1A GC03P053782 PIR47826 CACNA1D
GH03J053772 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.2 +92.4 92397 1.8 HDGF PKNOX1 SMAD1 YBX1 BATF IRF4 ATF7 ETV6 BCLAF1 IKZF2 IL17RB GC03P053782 PIR47826 CACNA1D
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR47826 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR47826 Gene

Genomic Locations for PIR47826 Gene
chr3:53,681,115-53,681,141
(GRCh38/hg38)
Size:
27 bases
Orientation:
Plus strand
chr3:53,715,142-53,715,168
(GRCh37/hg19)
Size:
27 bases
Orientation:
Plus strand

Genomic View for PIR47826 Gene

Genes around PIR47826 on UCSC Golden Path with GeneCards custom track

PIR47826 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR47826 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR47826 Gene

Function for PIR47826 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR47826 Gene

Localization for PIR47826 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR47826 Gene

Pathways & Interactions for PIR47826 Gene

SuperPathways for PIR47826 Gene

No Data Available

Interacting Proteins for PIR47826 Gene

Gene Ontology (GO) - Biological Process for PIR47826 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR47826 Gene

Drugs & Compounds for PIR47826 Gene

No Compound Related Data Available

Transcripts for PIR47826 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR47826 Gene

No ASD Table

Relevant External Links for PIR47826 Gene

GeneLoc Exon Structure for
PIR47826

No data available for mRNA/cDNA for PIR47826 Gene

Expression for PIR47826 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR47826 Gene

Orthologs for PIR47826 Gene

No data available for Orthologs and Evolution for PIR47826 Gene

Paralogs for PIR47826 Gene

No data available for Paralogs for PIR47826 Gene

Variants for PIR47826 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR47826 Gene

Disorders for PIR47826 Gene

No disorders were found for PIR47826 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR47826 Gene

Publications for PIR47826 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR47826 Gene

Sources for PIR47826 Gene

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