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Aliases for PIR47822 Gene

Subcategory (RNA class) for PIR47822 Gene

piRNA

Quality Score for this RNA gene is

24

Aliases for PIR47822 Gene

No Aliases found

ORGUL Members for PIR47822 Gene

Previous GeneCards Identifiers for PIR47822 Gene

  • GC17M073316
  • GC17M075320

No data available for External Ids for PIR47822 Gene

Summaries for PIR47822 Gene

GeneCards Summary for PIR47822 Gene

PIR47822 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR47822 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for PIR47822

Additional gene information for PIR47822 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR47822 Gene

Genomics for PIR47822 Gene

GeneHancer (GH) Regulatory Elements for PIR47822 Gene

Promoters and enhancers for PIR47822 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J075321 Enhancer 0.2 dbSUPER 650.7 -1.9 -1924 0.6 GC17M075321 PIR47822 GC17P075318 RPL36AP7 GRB2
GH17J075311 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.7 +3.8 3785 10 HDGF PKNOX1 IRF4 ZNF48 ZNF143 ATF7 FOS RUNX3 PAF1 JUNB GC17P075318 GRB2 MRPS7 NUP85 MIF4GD SLC25A19 H3F3B LLGL2 SAP30BP USH1G
GH17J075322 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 0.7 -3.4 -3409 1.4 PKNOX1 ARID4B SIN3A ZNF2 ZNF143 ZFP91 RUNX3 CAVIN1 REST ZNF592 GRB2 MRPS7 TMEM94 TSEN54 H3F3B SLC25A19 SAP30BP GGA3 SLC16A5 GC17M075321
GH17J075324 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 -6.0 -6006 2.5 HDAC1 NCOA3 ZEB1 GATA3 GATA2 POLR2A EED VEZF1 NFE2 RUNX3 MRPS7 NUP85 GC17M075321 GC17P075318 PIR47822 RPL36AP7 GRB2
GH17J075328 Enhancer 0.6 dbSUPER 0.4 -9.3 -9294 0.6 ZNF680 ZBTB11 ZFP64 ZNF140 ZNF266 ZC3H11A REST ZBTB8A ZNF623 ZNF781 NUP85 UNK NAT9 ENSG00000267342 NT5C GGA3 TRIM65 CDK3 ENSG00000266980 SAP30BP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR47822 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR47822 Gene

Genomic Locations for PIR47822 Gene
chr17:75,319,940-75,319,970
(GRCh38/hg38)
Size:
31 bases
Orientation:
Minus strand
chr17:73,316,021-73,316,051
(GRCh37/hg19)
Size:
31 bases
Orientation:
Minus strand

Genomic View for PIR47822 Gene

Genes around PIR47822 on UCSC Golden Path with GeneCards custom track

PIR47822 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR47822 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR47822 Gene

ORGUL Member Location for PIR47822 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR47822 Gene

Function for PIR47822 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR47822 Gene

Localization for PIR47822 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR47822 Gene

Pathways & Interactions for PIR47822 Gene

SuperPathways for PIR47822 Gene

No Data Available

Interacting Proteins for PIR47822 Gene

Gene Ontology (GO) - Biological Process for PIR47822 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR47822 Gene

Drugs & Compounds for PIR47822 Gene

No Compound Related Data Available

Transcripts for PIR47822 Gene

fRNAdb Secondary structures for PIR47822 Gene

  • FR405705

Alternative Splicing Database (ASD) splice patterns (SP) for PIR47822 Gene

No ASD Table

Relevant External Links for PIR47822 Gene

GeneLoc Exon Structure for
PIR47822

No data available for mRNA/cDNA for PIR47822 Gene

Expression for PIR47822 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR47822 Gene

Orthologs for PIR47822 Gene

No data available for Orthologs and Evolution for PIR47822 Gene

Paralogs for PIR47822 Gene

No data available for Paralogs for PIR47822 Gene

Variants for PIR47822 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR47822 Gene

Disorders for PIR47822 Gene

No disorders were found for PIR47822 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR47822 Gene

Publications for PIR47822 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR47822 Gene

Sources for PIR47822 Gene

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