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Aliases for PIR47770 Gene

Subcategory (RNA class) for PIR47770 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR47770 Gene

No Aliases found

ORGUL Members for PIR47770 Gene

Previous GeneCards Identifiers for PIR47770 Gene

  • GC21P045522

No data available for External Ids for PIR47770 Gene

Summaries for PIR47770 Gene

GeneCards Summary for PIR47770 Gene

PIR47770 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR47770 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR47770 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR47770 Gene

Genomics for PIR47770 Gene

GeneHancer (GH) Regulatory Elements for PIR47770 Gene

Promoters and enhancers for PIR47770 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J044102 Enhancer 0.5 dbSUPER 600.7 +0.8 843 1.5 EGR1 ZNF600 ZNF341 ZFHX2 ZBTB6 EGR2 PIR47770 TRAPPC10 PWP2
GH21J044080 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 0.4 -16.9 -16898 10.9 MYC SP1 EGR1 RXRA RELA CTBP1 POLR2A ZNF592 SIN3A MNT PWP2 TRAPPC10 GATD3A PFKL PIR47770 H2AFZP1
GH21J044095 Enhancer 0.9 ENCODE dbSUPER 0.4 -7.0 -6968 1 SP7 ZBTB8A ZIC2 ZNF692 ZNF341 SCRT2 OSR2 NR2F2 ZNF189 ZNF223 PWP2 PIR47770 H2AFZP1 TRAPPC10
GH21J044064 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -37.5 -37469 2.8 CREM CEBPG ZBTB33 POLR2A MAX EGR2 EMSY PWP2 TRAPPC10 PFKL CFAP410 H2AFZP1 PIR47770
GH21J044048 Enhancer 1 Ensembl ENCODE dbSUPER 0.2 -51.8 -51766 4.2 PRDM1 ZNF600 ZIC2 ATF7 ATF2 WT1 CTCF GLIS1 PWP2 TRAPPC10 H2AFZP1 PIR47770
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR47770 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR47770 Gene

Genomic Locations for PIR47770 Gene
chr21:44,102,870-44,102,896
(GRCh38/hg38)
Size:
27 bases
Orientation:
Plus strand
chr21:45,522,751-45,522,777
(GRCh37/hg19)
Size:
27 bases
Orientation:
Plus strand

Genomic View for PIR47770 Gene

Genes around PIR47770 on UCSC Golden Path with GeneCards custom track

PIR47770 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR47770 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR47770 Gene

Proteins for PIR47770 Gene

Post-translational modifications for PIR47770 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR47770 Gene

Domains & Families for PIR47770 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR47770 Gene

Function for PIR47770 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR47770 Gene

Localization for PIR47770 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR47770 Gene

Pathways & Interactions for PIR47770 Gene

PathCards logo

SuperPathways for PIR47770 Gene

No Data Available

Interacting Proteins for PIR47770 Gene

Gene Ontology (GO) - Biological Process for PIR47770 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR47770 Gene

Drugs & Compounds for PIR47770 Gene

No Compound Related Data Available

Transcripts for PIR47770 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR47770 Gene

No ASD Table

Relevant External Links for PIR47770 Gene

GeneLoc Exon Structure for
PIR47770

No data available for mRNA/cDNA for PIR47770 Gene

Expression for PIR47770 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR47770 Gene

Orthologs for PIR47770 Gene

No data available for Orthologs and Evolution for PIR47770 Gene

Paralogs for PIR47770 Gene

No data available for Paralogs for PIR47770 Gene

Variants for PIR47770 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR47770 Gene

Disorders for PIR47770 Gene

No disorders were found for PIR47770 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR47770 Gene

Publications for PIR47770 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for PIR47770 Gene

Products for PIR47770 Gene

Sources for PIR47770 Gene

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