Free for academic non-profit institutions. Other users need a Commercial license

Aliases for PIR47578 Gene

Subcategory (RNA class) for PIR47578 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR47578 Gene

No Aliases found

ORGUL Members for PIR47578 Gene

No data available for External Ids for PIR47578 Gene

Summaries for PIR47578 Gene

GeneCards Summary for PIR47578 Gene

PIR47578 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR47578 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR47578 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR47578 Gene

Genomics for PIR47578 Gene

GeneHancer (GH) Regulatory Elements for PIR47578 Gene

Promoters and enhancers for PIR47578 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J013916 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +33.8 33810 8.2 MAFK FOSL2 POLR2A NFE2L2 ATF7 SOX13 MNT CHD2 JUN SP1 PIR47578 PIR55980 LINC01182
GH04J013905 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +47.3 47278 3.9 CTCF MAFK ELF1 FOSL2 POLR2A CEBPA REST CEBPB JUN SP1 PIR55980 PIR47578 LINC01182
GH04J013966 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 -12.4 -12401 1.6 ATF7 NR2F2 JUND ATF2 PIR47578 LOC391636 LINC01182
GH04J013890 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.2 +61.8 61804 3.8 MAFK FOSL2 POLR2A REST CTBP1 SP1 RFX1 ATF3 FOS DPF2 PIR55980 PIR47578 LINC01182
GH04J013969 Enhancer 0.6 Ensembl dbSUPER 0.4 -14.3 -14294 1 POLR2A CTCF JUND LOC391636 PIR47578 LINC01182
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR47578 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR47578 Gene

Genomic Locations for PIR47578 Gene
chr4:13,954,373-13,954,400
(GRCh38/hg38)
Size:
28 bases
Orientation:
Minus strand
chr4:13,955,997-13,956,024
(GRCh37/hg19)
Size:
28 bases
Orientation:
Minus strand

Genomic View for PIR47578 Gene

Genes around PIR47578 on UCSC Golden Path with GeneCards custom track

PIR47578 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR47578 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR47578 Gene

Proteins for PIR47578 Gene

Post-translational modifications for PIR47578 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR47578 Gene

Domains & Families for PIR47578 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR47578 Gene

Function for PIR47578 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR47578 Gene

Localization for PIR47578 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR47578 Gene

Pathways & Interactions for PIR47578 Gene

PathCards logo

SuperPathways for PIR47578 Gene

No Data Available

Interacting Proteins for PIR47578 Gene

Gene Ontology (GO) - Biological Process for PIR47578 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR47578 Gene

Drugs & Compounds for PIR47578 Gene

No Compound Related Data Available

Transcripts for PIR47578 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR47578 Gene

No ASD Table

Relevant External Links for PIR47578 Gene

GeneLoc Exon Structure for
PIR47578

No data available for mRNA/cDNA for PIR47578 Gene

Expression for PIR47578 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR47578 Gene

Orthologs for PIR47578 Gene

No data available for Orthologs and Evolution for PIR47578 Gene

Paralogs for PIR47578 Gene

No data available for Paralogs for PIR47578 Gene

Variants for PIR47578 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR47578 Gene

Disorders for PIR47578 Gene

No disorders were found for PIR47578 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR47578 Gene

Publications for PIR47578 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for PIR47578 Gene

Products for PIR47578 Gene

Sources for PIR47578 Gene

Content
Loading form....