Free for academic non-profit institutions. Other users need a Commercial license

Aliases for PIR47560 Gene

Subcategory (RNA class) for PIR47560 Gene

piRNA

Quality Score for this RNA gene is

11

Aliases for PIR47560 Gene

No Aliases found

ORGUL Members for PIR47560 Gene

Previous GeneCards Identifiers for PIR47560 Gene

  • GC07P013142
  • GC07P013111
  • GC07P013112
  • GC07P013113
  • GC07P013114
  • GC07P013115
  • GC07P013116
  • GC07P013117

No data available for External Ids for PIR47560 Gene

Summaries for PIR47560 Gene

GeneCards Summary for PIR47560 Gene

PIR47560 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR47560 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for PIR47560

Additional gene information for PIR47560 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR47560 Gene

Genomics for PIR47560 Gene

GeneHancer (GH) Regulatory Elements for PIR47560 Gene

Promoters and enhancers for PIR47560 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I013104 Enhancer 0.6 ENCODE 550.8 +1.9 1894 0.2 GATAD2A FOXA2 FOXA3 ETV1 HLF CEBPB CEBPG GABPA FOXA1 CEBPA GC07P013103 GC07P013104 GC07P013105 GC07P013106 GC07P013107 GC07P013108 GC07P013109 GC07P013110 PIR38397 PIR47560
GH07I013099 Enhancer 0.7 ENCODE 0.8 -3.1 -3066 0.2 MEIS2 PKNOX1 FOXA2 SAP130 BATF FOSL1 FOXK2 TRIM24 ATF7 FOS GC07P013103 GC07P013104 GC07P013105 GC07P013106 GC07P013107 GC07P013108 GC07P013109 GC07P013110 PIR47560 PIR47674
GH07I013015 Enhancer 1.4 FANTOM5 Ensembl ENCODE 0.2 -85.6 -85580 2.9 FOXA2 MLX ARID4B SIN3A ZNF48 ETS1 FOS SP5 ZHX2 MIER2 PIR47674 GC07P013106 GC07P013107 GC07P013110 LOC105375158 PIR47560 GC07P013109 GC07P013108 GC07P013105 GC07P013104
GH07I013057 Enhancer 0.9 Ensembl ENCODE 0.3 -44.8 -44798 1.2 HDAC1 BCOR PKNOX1 IRF2 LEF1 MCM2 CHAMP1 CC2D1A ARHGAP35 ZNF184 LOC105375161 GC07P013103 GC07P013104 GC07P013105 GC07P013106 GC07P013107 GC07P013108 GC07P013109 GC07P013110 PIR47674
GH07I013049 Enhancer 0.8 ENCODE 0.2 -51.9 -51915 1.8 FOXA2 NCOA2 CHAMP1 FOS CEBPB ZNF592 ZNF217 SP1 MAFF SMARCA4 PIR47674 GC07P013103 GC07P013104 GC07P013105 GC07P013106 GC07P013107 GC07P013108 GC07P013109 GC07P013110 PIR47560
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR47560 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR47560 Gene

Genomic Locations for PIR47560 Gene
chr7:13,102,457-13,102,489
(GRCh38/hg38)
Size:
33 bases
Orientation:
Plus strand
chr7:13,142,082-13,142,114
(GRCh37/hg19)

Genomic View for PIR47560 Gene

Genes around PIR47560 on UCSC Golden Path with GeneCards custom track

PIR47560 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR47560 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR47560 Gene

ORGUL Member Location for PIR47560 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR47560 Gene

Proteins for PIR47560 Gene

Post-translational modifications for PIR47560 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR47560 Gene

Domains & Families for PIR47560 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR47560 Gene

Function for PIR47560 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR47560 Gene

Localization for PIR47560 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR47560 Gene

Pathways & Interactions for PIR47560 Gene

SuperPathways for PIR47560 Gene

No Data Available

Interacting Proteins for PIR47560 Gene

Gene Ontology (GO) - Biological Process for PIR47560 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR47560 Gene

Drugs & Compounds for PIR47560 Gene

No Compound Related Data Available

Transcripts for PIR47560 Gene

fRNAdb Secondary structures for PIR47560 Gene

  • FR120982

Alternative Splicing Database (ASD) splice patterns (SP) for PIR47560 Gene

No ASD Table

Relevant External Links for PIR47560 Gene

GeneLoc Exon Structure for
PIR47560

No data available for mRNA/cDNA for PIR47560 Gene

Expression for PIR47560 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR47560 Gene

Orthologs for PIR47560 Gene

No data available for Orthologs and Evolution for PIR47560 Gene

Paralogs for PIR47560 Gene

No data available for Paralogs for PIR47560 Gene

Variants for PIR47560 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR47560 Gene

Disorders for PIR47560 Gene

No disorders were found for PIR47560 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR47560 Gene

Publications for PIR47560 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR47560 Gene

Sources for PIR47560 Gene

Content
Loading form....