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Aliases for PIR47001 Gene

Subcategory (RNA class) for PIR47001 Gene

piRNA

Quality Score for this RNA gene is

24

Aliases for PIR47001 Gene

No Aliases found

ORGUL Members for PIR47001 Gene

Previous GeneCards Identifiers for PIR47001 Gene

  • GC08P011816

No data available for External Ids for PIR47001 Gene

Summaries for PIR47001 Gene

GeneCards Summary for PIR47001 Gene

PIR47001 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR47001 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for PIR47001

Additional gene information for PIR47001 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR47001 Gene

Genomics for PIR47001 Gene

GeneHancer (GH) Regulatory Elements for PIR47001 Gene

Promoters and enhancers for PIR47001 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J011958 Enhancer 0.7 ENCODE 650.7 +0.2 158 0.2 HDAC1 CTCF CEBPG RAD21 CC2D1A ZNF316 ARID2 ZNF366 SMC3 ZNF143 GC08P011959 PIR47001 LOC100421446 DEFB134 ENSG00000255310 LINC00681 DEFB136 GC08M011947
GH08J011954 Enhancer 1 Ensembl ENCODE 0.7 -3.1 -3065 1.7 FOXA2 KLF17 ZNF2 ZNF335 GLIS2 RCOR1 ZNF362 RXRA ZBTB11 CEBPB LOC100421446 DEFB134 FAM66A ENSG00000255310 LINC00681 GC08P011959 PIR47001 LOC105379244 GC08M011947
GH08J011942 Enhancer 0.9 ENCODE 0.4 -16.5 -16492 0.2 HDAC1 PKNOX1 ATF1 TCF12 ZNF766 EGR1 ATF7 CREM RXRA ZBTB2 LOC105379244 DEFB136 DEFB135 ENSG00000269918 PIR47001 GC08P011959
GH08J011943 Enhancer 0.8 ENCODE 0.4 -15.1 -15082 0.2 ATF1 RB1 ARID4B SIN3A ZNF2 ZNF48 RAD21 YY1 ZNF335 ZNF121 LOC105379244 PIR47001 GC08P011959
GH08J011968 Enhancer 0.3 ENCODE 0.4 +9.4 9388 0.2 RUNX3 ENSG00000269918 DEFB136 GC08P011959 PIR47001 GC08M011947
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR47001 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR47001 Gene

Genomic Locations for PIR47001 Gene
chr8:11,958,889-11,958,919
(GRCh38/hg38)
Size:
31 bases
Orientation:
Plus strand
chr8:11,816,398-11,816,428
(GRCh37/hg19)
Size:
31 bases
Orientation:
Plus strand

Genomic View for PIR47001 Gene

Genes around PIR47001 on UCSC Golden Path with GeneCards custom track

PIR47001 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR47001 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR47001 Gene

ORGUL Member Location for PIR47001 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR47001 Gene

Function for PIR47001 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR47001 Gene

Localization for PIR47001 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR47001 Gene

Pathways & Interactions for PIR47001 Gene

SuperPathways for PIR47001 Gene

No Data Available

Interacting Proteins for PIR47001 Gene

Gene Ontology (GO) - Biological Process for PIR47001 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR47001 Gene

Drugs & Compounds for PIR47001 Gene

No Compound Related Data Available

Transcripts for PIR47001 Gene

fRNAdb Secondary structures for PIR47001 Gene

  • FR370286

Alternative Splicing Database (ASD) splice patterns (SP) for PIR47001 Gene

No ASD Table

Relevant External Links for PIR47001 Gene

GeneLoc Exon Structure for
PIR47001

No data available for mRNA/cDNA for PIR47001 Gene

Expression for PIR47001 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR47001 Gene

Orthologs for PIR47001 Gene

No data available for Orthologs and Evolution for PIR47001 Gene

Paralogs for PIR47001 Gene

No data available for Paralogs for PIR47001 Gene

Variants for PIR47001 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR47001 Gene

Disorders for PIR47001 Gene

No disorders were found for PIR47001 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR47001 Gene

Publications for PIR47001 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR47001 Gene

Sources for PIR47001 Gene

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