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Aliases for PIR46563 Gene

Subcategory (RNA class) for PIR46563 Gene

piRNA

Quality Score for this RNA gene is

24

Aliases for PIR46563 Gene

No Aliases found

ORGUL Members for PIR46563 Gene

Previous GeneCards Identifiers for PIR46563 Gene

  • GC11M012989

No data available for External Ids for PIR46563 Gene

Summaries for PIR46563 Gene

GeneCards Summary for PIR46563 Gene

PIR46563 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR46563 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for PIR46563

Additional gene information for PIR46563 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR46563 Gene

Genomics for PIR46563 Gene

GeneHancer (GH) Regulatory Elements for PIR46563 Gene

Promoters and enhancers for PIR46563 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J012966 Enhancer 0.2 Ensembl 600.7 +1.5 1507 0.8 PIR46563 GC11M012967 PIR41328 LINC00958
GH11J012964 Enhancer 0.8 Ensembl 0.7 +3.6 3608 0.6 CC2D1A CTCF RAD21 RXRA ARID2 GATAD2A ZNF143 REST ZNF740 TRIM22 PIR46563 GC11M012967 PIR41328 LINC00958
GH11J012969 Enhancer 0.4 Ensembl 0.7 -2.8 -2793 1.8 SUPT5H ZNF146 ZMYM3 GC11M012967 PIR46563 GC11M012980 LINC00958
GH11J012975 Enhancer 0.5 Ensembl 0.4 -7.6 -7593 1 POLR2A ZSCAN29 SUPT5H CEBPB CEBPG LINC00958 PIR46563 GC11M012980 GC11M012967
GH11J012962 Enhancer 0.3 Ensembl 0.4 +5.4 5407 1 RAD21 PIR41328 PIR46563 GC11M012967 LINC00958
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR46563 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR46563 Gene

Genomic Locations for PIR46563 Gene
chr11:12,967,878-12,967,908
(GRCh38/hg38)
Size:
31 bases
Orientation:
Minus strand
chr11:12,989,425-12,989,455
(GRCh37/hg19)
Size:
31 bases
Orientation:
Minus strand

Genomic View for PIR46563 Gene

Genes around PIR46563 on UCSC Golden Path with GeneCards custom track

PIR46563 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR46563 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR46563 Gene

ORGUL Member Location for PIR46563 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR46563 Gene

Proteins for PIR46563 Gene

Post-translational modifications for PIR46563 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR46563 Gene

Domains & Families for PIR46563 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR46563 Gene

Function for PIR46563 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR46563 Gene

Localization for PIR46563 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR46563 Gene

Pathways & Interactions for PIR46563 Gene

PathCards logo

SuperPathways for PIR46563 Gene

No Data Available

Interacting Proteins for PIR46563 Gene

Gene Ontology (GO) - Biological Process for PIR46563 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR46563 Gene

Drugs & Compounds for PIR46563 Gene

No Compound Related Data Available

Transcripts for PIR46563 Gene

fRNAdb Secondary structures for PIR46563 Gene

  • FR235014

Alternative Splicing Database (ASD) splice patterns (SP) for PIR46563 Gene

No ASD Table

Relevant External Links for PIR46563 Gene

GeneLoc Exon Structure for
PIR46563

No data available for mRNA/cDNA for PIR46563 Gene

Expression for PIR46563 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR46563 Gene

Orthologs for PIR46563 Gene

No data available for Orthologs and Evolution for PIR46563 Gene

Paralogs for PIR46563 Gene

No data available for Paralogs for PIR46563 Gene

Variants for PIR46563 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR46563 Gene

Disorders for PIR46563 Gene

No disorders were found for PIR46563 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR46563 Gene

Publications for PIR46563 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for PIR46563 Gene

Products for PIR46563 Gene

Sources for PIR46563 Gene

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