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Aliases for PIR45623 Gene

Subcategory (RNA class) for PIR45623 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR45623 Gene

No Aliases found

ORGUL Members for PIR45623 Gene

Previous GeneCards Identifiers for PIR45623 Gene

  • GC16P011892

No data available for External Ids for PIR45623 Gene

Summaries for PIR45623 Gene

GeneCards Summary for PIR45623 Gene

PIR45623 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR45623 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR45623 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR45623 Gene

Genomics for PIR45623 Gene

GeneHancer (GH) Regulatory Elements for PIR45623 Gene

Promoters and enhancers for PIR45623 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I011790 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.8 -2.5 -2531 10.1 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF213 ZNF143 SP3 NFYC SSRP1 ZC3H7A ENSG00000277369 GC16P011798 PRM2 NPIPB2 PRM1 LITAF SNN TXNDC11 LOC105371089
GH16I011802 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.8 +3.1 3135 0.3 FOSL1 CTBP1 ADNP IKZF1 ZC3H7A PIR45623 BCAR4
GH16I011801 Enhancer 0.7 ENCODE dbSUPER 0.8 +2.9 2850 0.2 FOSL1 EGR1 ADNP ZBTB33 PIR45623 BCAR4
GH16I011809 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 +11.8 11841 1.7 ELF3 FOXA2 MLX ARID4B DMAP1 KLF5 DNMT3B ZSCAN9 YY1 SLC30A9 ZC3H7A ENSG00000261560 LOC105371084 COX6CP1 HNRNPCP4 TXNDC11 RSL1D1 ENSG00000261216 SOCS1 LOC105371089
GH16I011822 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.3 +25.3 25341 3.1 FOXA2 MLX ARID4B DMAP1 ZNF48 ETS1 TCF12 ZNF766 RXRA ZHX2 RSL1D1 NPIPB2 BCAR4 PIR45623
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR45623 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR45623 Gene

Genomic Locations for PIR45623 Gene
chr16:11,798,433-11,798,461
(GRCh38/hg38)
Size:
29 bases
Orientation:
Plus strand
chr16:11,892,289-11,892,317
(GRCh37/hg19)

Genomic View for PIR45623 Gene

Genes around PIR45623 on UCSC Golden Path with GeneCards custom track

PIR45623 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR45623 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR45623 Gene

Proteins for PIR45623 Gene

Post-translational modifications for PIR45623 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR45623 Gene

Domains & Families for PIR45623 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR45623 Gene

Function for PIR45623 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR45623 Gene

Localization for PIR45623 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR45623 Gene

Pathways & Interactions for PIR45623 Gene

SuperPathways for PIR45623 Gene

No Data Available

Interacting Proteins for PIR45623 Gene

Gene Ontology (GO) - Biological Process for PIR45623 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR45623 Gene

Drugs & Compounds for PIR45623 Gene

No Compound Related Data Available

Transcripts for PIR45623 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR45623 Gene

No ASD Table

Relevant External Links for PIR45623 Gene

GeneLoc Exon Structure for
PIR45623

No data available for mRNA/cDNA for PIR45623 Gene

Expression for PIR45623 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR45623 Gene

Orthologs for PIR45623 Gene

No data available for Orthologs and Evolution for PIR45623 Gene

Paralogs for PIR45623 Gene

No data available for Paralogs for PIR45623 Gene

Variants for PIR45623 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR45623 Gene

Disorders for PIR45623 Gene

No disorders were found for PIR45623 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR45623 Gene

Publications for PIR45623 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR45623 Gene

Sources for PIR45623 Gene

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