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Aliases for PIR45603 Gene

Subcategory (RNA class) for PIR45603 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR45603 Gene

No Aliases found

ORGUL Members for PIR45603 Gene

Previous GeneCards Identifiers for PIR45603 Gene

  • GC01P223290

No data available for External Ids for PIR45603 Gene

Summaries for PIR45603 Gene

GeneCards Summary for PIR45603 Gene

PIR45603 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR45603 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR45603 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR45603 Gene

Genomics for PIR45603 Gene

GeneHancer (GH) Regulatory Elements for PIR45603 Gene

Promoters and enhancers for PIR45603 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J223119 Enhancer 0.6 ENCODE 650.7 +1.9 1926 0.2 SMARCE1 MAZ DPF2 NR2F2 SP1 ZNF217 CTBP1 GATA3 RCOR1 PIR45603 TLR5
GH01J223116 Promoter 0.5 EPDnew 650.7 -1.0 -1009 0.1 PIR45603 TLR5 LOC102724046
GH01J223114 Enhancer 0.7 Ensembl ENCODE 0.7 -2.5 -2514 1.1 ZNF316 TRIM24 TRIM28 NR2F2 PIR45603 LOC102724046 TLR5
GH01J223129 Enhancer 1.1 Ensembl ENCODE 0.4 +11.9 11941 0.7 RB1 ZFP64 KLF17 KLF14 ZNF2 ZNF48 RAD21 ZNF335 GLIS2 ZNF213 DISP1 ENSG00000228106 CAPN2 PIR45603 TLR5
GH01J223133 Enhancer 1.1 Ensembl ENCODE 0.4 +16.9 16922 2.5 PKNOX1 SIN3A ZNF2 ZNF48 YY1 ZNF143 KLF13 SP3 SP5 REST TLR5 PIR45603
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR45603 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR45603 Gene

Genomic Locations for PIR45603 Gene
chr1:223,117,628-223,117,654
(GRCh38/hg38)
Size:
27 bases
Orientation:
Plus strand
chr1:223,290,970-223,290,996
(GRCh37/hg19)
Size:
27 bases
Orientation:
Plus strand

Genomic View for PIR45603 Gene

Genes around PIR45603 on UCSC Golden Path with GeneCards custom track

PIR45603 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR45603 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR45603 Gene

Function for PIR45603 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR45603 Gene

Localization for PIR45603 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR45603 Gene

Pathways & Interactions for PIR45603 Gene

SuperPathways for PIR45603 Gene

No Data Available

Interacting Proteins for PIR45603 Gene

Gene Ontology (GO) - Biological Process for PIR45603 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR45603 Gene

Drugs & Compounds for PIR45603 Gene

No Compound Related Data Available

Transcripts for PIR45603 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR45603 Gene

No ASD Table

Relevant External Links for PIR45603 Gene

GeneLoc Exon Structure for
PIR45603

No data available for mRNA/cDNA for PIR45603 Gene

Expression for PIR45603 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR45603 Gene

Orthologs for PIR45603 Gene

No data available for Orthologs and Evolution for PIR45603 Gene

Paralogs for PIR45603 Gene

No data available for Paralogs for PIR45603 Gene

Variants for PIR45603 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR45603 Gene

Disorders for PIR45603 Gene

No disorders were found for PIR45603 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR45603 Gene

Publications for PIR45603 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR45603 Gene

Sources for PIR45603 Gene

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