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Aliases for PIR45600 Gene

Subcategory (RNA class) for PIR45600 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR45600 Gene

No Aliases found

ORGUL Members for PIR45600 Gene

No data available for External Ids for PIR45600 Gene

Summaries for PIR45600 Gene

GeneCards Summary for PIR45600 Gene

PIR45600 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR45600 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR45600 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR45600 Gene

Genomics for PIR45600 Gene

GeneHancer (GH) Regulatory Elements for PIR45600 Gene

Promoters and enhancers for PIR45600 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J033414 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.7 +4.2 4240 6.4 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 E2F8 ZNF143 CUTA SYNGAP1 LEMD2 BRD2 VPS52 RXRB WDR46 DAXX RGL2 HCG25
GH06J033409 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 0.7 -2.4 -2408 4.1 HDGF PKNOX1 SMAD1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 SLC30A9 PHF1 DAXX BRD2 LEMD2 RXRB VPS52 RGL2 WDR46 RING1 HCG25
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR45600 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR45600 Gene

Genomic Locations for PIR45600 Gene
chr6:33,413,469-33,413,495
(GRCh38/hg38)
Size:
27 bases
Orientation:
Plus strand
chr6:33,381,246-33,381,272
(GRCh37/hg19)
Size:
27 bases
Orientation:
Plus strand

Genomic View for PIR45600 Gene

Genes around PIR45600 on UCSC Golden Path with GeneCards custom track

PIR45600 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR45600 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR45600 Gene

Function for PIR45600 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR45600 Gene

Localization for PIR45600 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR45600 Gene

Pathways & Interactions for PIR45600 Gene

SuperPathways for PIR45600 Gene

No Data Available

Interacting Proteins for PIR45600 Gene

Gene Ontology (GO) - Biological Process for PIR45600 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR45600 Gene

Drugs & Compounds for PIR45600 Gene

No Compound Related Data Available

Transcripts for PIR45600 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR45600 Gene

No ASD Table

Relevant External Links for PIR45600 Gene

GeneLoc Exon Structure for
PIR45600

No data available for mRNA/cDNA for PIR45600 Gene

Expression for PIR45600 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR45600 Gene

Orthologs for PIR45600 Gene

No data available for Orthologs and Evolution for PIR45600 Gene

Paralogs for PIR45600 Gene

No data available for Paralogs for PIR45600 Gene

Variants for PIR45600 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR45600 Gene

Disorders for PIR45600 Gene

No disorders were found for PIR45600 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR45600 Gene

Publications for PIR45600 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR45600 Gene

Sources for PIR45600 Gene

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