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Aliases for PIR45597 Gene

Subcategory (RNA class) for PIR45597 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR45597 Gene

No Aliases found

ORGUL Members for PIR45597 Gene

Previous GeneCards Identifiers for PIR45597 Gene

  • GC17P040822

No data available for External Ids for PIR45597 Gene

Summaries for PIR45597 Gene

GeneCards Summary for PIR45597 Gene

PIR45597 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR45597 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR45597 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR45597 Gene

Genomics for PIR45597 Gene

GeneHancer (GH) Regulatory Elements for PIR45597 Gene

Promoters and enhancers for PIR45597 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I042669 Enhancer 1 Ensembl ENCODE dbSUPER 550.8 +0.5 542 3.4 CTCF SIN3A USF2 REST ZNF316 POLR2A ZBTB33 KLF8 EZH2 PIR45597 PSMC3IP RETREG3 TUBG1 HMGN2P15 RAMP2 RAMP2-AS1 VPS25 TUBG2 NAGLU
GH17I042666 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.8 -3.0 -3013 2.1 PKNOX1 MLX KLF17 SIN3A RAD21 RFX5 YY1 GLIS2 SCRT2 RCOR1 CNTNAP1 TUBG2 TUBG1 RETREG3 PSMC3IP HMGN2P15 RAMP2 RAMP2-AS1 VPS25 PIR45597
GH17I042658 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 0.4 -11.1 -11052 1.5 HDGF MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZNF48 YY1 SLC30A9 TUBG2 PIR45597
GH17I042660 Enhancer 1.1 ENCODE dbSUPER 0.4 -9.5 -9464 1.5 HDAC1 PKNOX1 ARNT ZNF2 ZEB1 ZNF366 RCOR1 FOS ATF7 SMARCC1 TUBG2 MLX TUBG1 RETREG3 PIR45597
GH17I042665 Enhancer 0.4 dbSUPER 0.8 -4.8 -4753 1.2 ZNF223 ATF7 ATF2 CNTNAP1 RETREG3 TUBG1 TUBG2 PIR45597
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR45597 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR45597 Gene

Genomic Locations for PIR45597 Gene
chr17:42,670,484-42,670,510
(GRCh38/hg38)
Size:
27 bases
Orientation:
Plus strand
chr17:40,822,502-40,822,528
(GRCh37/hg19)

Genomic View for PIR45597 Gene

Genes around PIR45597 on UCSC Golden Path with GeneCards custom track

PIR45597 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR45597 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR45597 Gene

Proteins for PIR45597 Gene

Post-translational modifications for PIR45597 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR45597 Gene

Domains & Families for PIR45597 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR45597 Gene

Function for PIR45597 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR45597 Gene

Localization for PIR45597 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR45597 Gene

Pathways & Interactions for PIR45597 Gene

SuperPathways for PIR45597 Gene

No Data Available

Interacting Proteins for PIR45597 Gene

Gene Ontology (GO) - Biological Process for PIR45597 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR45597 Gene

Drugs & Compounds for PIR45597 Gene

No Compound Related Data Available

Transcripts for PIR45597 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR45597 Gene

No ASD Table

Relevant External Links for PIR45597 Gene

GeneLoc Exon Structure for
PIR45597

No data available for mRNA/cDNA for PIR45597 Gene

Expression for PIR45597 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR45597 Gene

Orthologs for PIR45597 Gene

No data available for Orthologs and Evolution for PIR45597 Gene

Paralogs for PIR45597 Gene

No data available for Paralogs for PIR45597 Gene

Variants for PIR45597 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR45597 Gene

Disorders for PIR45597 Gene

No disorders were found for PIR45597 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR45597 Gene

Publications for PIR45597 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR45597 Gene

Sources for PIR45597 Gene

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