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Aliases for PIR45588 Gene

Subcategory (RNA class) for PIR45588 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR45588 Gene

No Aliases found

ORGUL Members for PIR45588 Gene

Previous GeneCards Identifiers for PIR45588 Gene

  • GC08M136465

No data available for External Ids for PIR45588 Gene

Summaries for PIR45588 Gene

GeneCards Summary for PIR45588 Gene

PIR45588 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR45588 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR45588 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR45588 Gene

Genomics for PIR45588 Gene

GeneHancer (GH) Regulatory Elements for PIR45588 Gene

Promoters and enhancers for PIR45588 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I135452 Enhancer 0.7 ENCODE 550.8 +1.1 1127 0.1 CTCF USF1 ZSCAN4 MAX ZNF384 RAD21 ZNF143 SMC3 ZNF444 RUNX3 PIR45588 LOC101927872 LINC01591
GH08I135454 Enhancer 0.2 FANTOM5 550.8 -1.3 -1299 0.4 PIR45588 KHDRBS3 LOC101927872
GH08I135455 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 0.8 -3.6 -3603 3.4 ARID4B SIN3A DMAP1 YY1 GLIS2 ZNF143 ATF7 REST KAT8 PPARGC1A LOC101927872 KHDRBS3 PIR45588
GH08I135395 Enhancer 0.2 ENCODE 0.2 +57.3 57319 1.2 LOC101927872 PIR45588 LINC01591
GH08I135235 Enhancer 0.4 ENCODE dbSUPER 0.1 +218.0 217977 0.2 LINC01591 PIR45588
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR45588 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR45588 Gene

Genomic Locations for PIR45588 Gene
chr8:135,453,661-135,453,690
(GRCh38/hg38)
Size:
30 bases
Orientation:
Minus strand
chr8:136,465,904-136,465,933
(GRCh37/hg19)

Genomic View for PIR45588 Gene

Genes around PIR45588 on UCSC Golden Path with GeneCards custom track

PIR45588 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR45588 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR45588 Gene

Proteins for PIR45588 Gene

Post-translational modifications for PIR45588 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR45588 Gene

Domains & Families for PIR45588 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR45588 Gene

Function for PIR45588 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR45588 Gene

Localization for PIR45588 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR45588 Gene

Pathways & Interactions for PIR45588 Gene

SuperPathways for PIR45588 Gene

No Data Available

Interacting Proteins for PIR45588 Gene

Gene Ontology (GO) - Biological Process for PIR45588 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR45588 Gene

Drugs & Compounds for PIR45588 Gene

No Compound Related Data Available

Transcripts for PIR45588 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR45588 Gene

No ASD Table

Relevant External Links for PIR45588 Gene

GeneLoc Exon Structure for
PIR45588

No data available for mRNA/cDNA for PIR45588 Gene

Expression for PIR45588 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR45588 Gene

Orthologs for PIR45588 Gene

No data available for Orthologs and Evolution for PIR45588 Gene

Paralogs for PIR45588 Gene

No data available for Paralogs for PIR45588 Gene

Variants for PIR45588 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR45588 Gene

Disorders for PIR45588 Gene

No disorders were found for PIR45588 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR45588 Gene

Publications for PIR45588 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR45588 Gene

Sources for PIR45588 Gene

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