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Aliases for PIR45478 Gene

Subcategory (RNA class) for PIR45478 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR45478 Gene

No Aliases found

ORGUL Members for PIR45478 Gene

Previous GeneCards Identifiers for PIR45478 Gene

  • GC13P041373

No data available for External Ids for PIR45478 Gene

Summaries for PIR45478 Gene

GeneCards Summary for PIR45478 Gene

PIR45478 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR45478 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR45478 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR45478 Gene

Genomics for PIR45478 Gene

GeneHancer (GH) Regulatory Elements for PIR45478 Gene

Promoters and enhancers for PIR45478 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J040798 Enhancer 0.8 Ensembl ENCODE 650.7 -0.6 -638 1.2 FOXA2 RXRA MAX REST YY1 SP1 JUND POLR2A PIR45478 SLC25A15 WBP4 TPTE2P5
GH13J040788 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 0.4 -9.4 -9400 2.7 PKNOX1 FOXA2 ARNT ZFP64 SIN3A ETS1 ELK1 ZNF207 ZNF143 ATF7 SLC25A15 KBTBD6 MRPS31 PIR45478
GH13J040800 Enhancer 0.8 ENCODE 0.7 +2.6 2581 3.6 FOXA2 RAD21 YY1 EGR1 HSF1 CREM THAP11 RXRA CEBPB ZBTB25 SLC25A15 LINC00548 WBP4 PIR45478 PIR49424 TPTE2P5
GH13J040793 Enhancer 0.6 ENCODE 0.7 -4.6 -4617 2.3 TAF1 RXRA CEBPB REST RAD21 YY1 NR2F2 SP1 JUND ATF3 SLC25A15 WBP4 MRPS31 PIR45478
GH13J040805 Enhancer 0.2 ENCODE 0.4 +7.0 7040 1.1 SLC25A15 PIR49424 PIR45478 TPTE2P5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR45478 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR45478 Gene

Genomic Locations for PIR45478 Gene
chr13:40,799,262-40,799,288
(GRCh38/hg38)
Size:
27 bases
Orientation:
Plus strand
chr13:41,373,398-41,373,424
(GRCh37/hg19)
Size:
27 bases
Orientation:
Plus strand

Genomic View for PIR45478 Gene

Genes around PIR45478 on UCSC Golden Path with GeneCards custom track

PIR45478 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR45478 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR45478 Gene

Function for PIR45478 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR45478 Gene

Localization for PIR45478 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR45478 Gene

Pathways & Interactions for PIR45478 Gene

SuperPathways for PIR45478 Gene

No Data Available

Interacting Proteins for PIR45478 Gene

Gene Ontology (GO) - Biological Process for PIR45478 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR45478 Gene

Drugs & Compounds for PIR45478 Gene

No Compound Related Data Available

Transcripts for PIR45478 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR45478 Gene

No ASD Table

Relevant External Links for PIR45478 Gene

GeneLoc Exon Structure for
PIR45478

No data available for mRNA/cDNA for PIR45478 Gene

Expression for PIR45478 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR45478 Gene

Orthologs for PIR45478 Gene

No data available for Orthologs and Evolution for PIR45478 Gene

Paralogs for PIR45478 Gene

No data available for Paralogs for PIR45478 Gene

Variants for PIR45478 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR45478 Gene

Disorders for PIR45478 Gene

No disorders were found for PIR45478 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR45478 Gene

Publications for PIR45478 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR45478 Gene

Sources for PIR45478 Gene

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