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Aliases for PIR45400 Gene

Subcategory (RNA class) for PIR45400 Gene

piRNA

Quality Score for this RNA gene is

11

Aliases for PIR45400 Gene

No Aliases found

ORGUL Members for PIR45400 Gene

No data available for External Ids for PIR45400 Gene

Summaries for PIR45400 Gene

GeneCards Summary for PIR45400 Gene

PIR45400 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR45400 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for PIR45400

Additional gene information for PIR45400 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR45400 Gene

Genomics for PIR45400 Gene

GeneHancer (GH) Regulatory Elements for PIR45400 Gene

Promoters and enhancers for PIR45400 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I050708 Enhancer 1.1 Ensembl ENCODE dbSUPER 550.8 +1.4 1427 1.4 CTCF MAX EBF1 BATF IRF4 POLR2A ZNF207 ETV6 IKZF2 RUNX3 GC16P050707 PIR45400 NOD2 ENSG00000270120
GH16I050706 Enhancer 0.7 ENCODE dbSUPER 550.8 -1.5 -1511 0.1 SMARCE1 NCOA3 ZNF217 CTBP1 GATA3 ESR1 DPF2 GC16P050707 PIR45400 NOD2
GH16I050695 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.4 -9.9 -9927 5.4 HDGF PKNOX1 CLOCK ATF1 SMAD1 DMAP1 IRF4 ZNF766 ZNF207 ATF7 NOD2 SNX20 CYLD ADCY7 GC16P050707 PIR45400
GH16I050711 Enhancer 0.9 Ensembl ENCODE 0.8 +4.5 4522 1.9 ATF1 NFIB ETV1 TEAD4 CEBPB CEBPG ZBTB40 ATF2 GABPA ATF4 ENSG00000270120 NOD2 GC16P050707 PIR45400
GH16I050702 Enhancer 0.8 FANTOM5 ENCODE dbSUPER 0.8 -4.8 -4828 2.1 MAX MYC SETDB1 NOD2 CYLD SNX20 ADCY7 GC16P050707 PIR45400
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR45400 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR45400 Gene

Genomic Locations for PIR45400 Gene
chr16:50,707,874-50,707,904
(GRCh38/hg38)
Size:
31 bases
Orientation:
Plus strand
chr16:50,741,785-50,741,815
(GRCh37/hg19)

Genomic View for PIR45400 Gene

Genes around PIR45400 on UCSC Golden Path with GeneCards custom track

PIR45400 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR45400 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR45400 Gene

ORGUL Member Location for PIR45400 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR45400 Gene

Proteins for PIR45400 Gene

Post-translational modifications for PIR45400 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR45400 Gene

Domains & Families for PIR45400 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR45400 Gene

Function for PIR45400 Gene

Phenotypes From GWAS Catalog for PIR45400 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR45400 Gene

Localization for PIR45400 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR45400 Gene

Pathways & Interactions for PIR45400 Gene

SuperPathways for PIR45400 Gene

No Data Available

Interacting Proteins for PIR45400 Gene

Gene Ontology (GO) - Biological Process for PIR45400 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR45400 Gene

Drugs & Compounds for PIR45400 Gene

No Compound Related Data Available

Transcripts for PIR45400 Gene

fRNAdb Secondary structures for PIR45400 Gene

  • FR037343

Alternative Splicing Database (ASD) splice patterns (SP) for PIR45400 Gene

No ASD Table

Relevant External Links for PIR45400 Gene

GeneLoc Exon Structure for
PIR45400

No data available for mRNA/cDNA for PIR45400 Gene

Expression for PIR45400 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR45400 Gene

Orthologs for PIR45400 Gene

No data available for Orthologs and Evolution for PIR45400 Gene

Paralogs for PIR45400 Gene

No data available for Paralogs for PIR45400 Gene

Variants for PIR45400 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR45400 Gene

Disorders for PIR45400 Gene

No disorders were found for PIR45400 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR45400 Gene

Publications for PIR45400 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR45400 Gene

Sources for PIR45400 Gene

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