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Aliases for PIR45394 Gene

Subcategory (RNA class) for PIR45394 Gene

piRNA

Quality Score for this RNA gene is

6

Aliases for PIR45394 Gene

No Aliases found

ORGUL Members for PIR45394 Gene

No data available for External Ids for PIR45394 Gene

Summaries for PIR45394 Gene

GeneCards Summary for PIR45394 Gene

PIR45394 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR45394 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR45394 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR45394 Gene

Genomics for PIR45394 Gene

GeneHancer (GH) Regulatory Elements for PIR45394 Gene

Promoters and enhancers for PIR45394 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I043520 Enhancer 0.8 ENCODE 550.8 -0.7 -744 0.2 ELF3 ARID4B ZNF2 ZNF48 ZSCAN9 RAD21 ZNF121 ZNF143 ZNF654 ZNF362 GC17P043522 PIR45394 ETV4 MEOX1 RNU6-406P MIR2117 SOST GC17M043486 DHX8 GC17P043560
GH17I043516 Enhancer 0.9 ENCODE 0.8 -3.9 -3910 1.2 PKNOX1 SMAD1 FEZF1 BATF ZNF2 IRF4 ZNF335 ZNF213 ZSCAN5C SCRT2 NBR2 ENSG00000267340 ETV4 DHX8 RNU6-1137P ENSG00000267002 LINC00910 RNU2-4P ARL4D SOST
GH17I043524 Promoter/Enhancer 1.8 EPDnew ENCODE dbSUPER 0.4 +7.1 7139 7.7 PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ETV4 RPL29P31 MEOX1 MIR2117HG RNU6-406P MIR2117 SOST PIR45394 GC17P043522 ENSG00000267747
GH17I043535 Enhancer 0.9 Ensembl ENCODE 0.4 +15.0 14999 1.6 ETV1 EBF1 FEZF1 FOSL1 ZFHX2 ZNF366 ZNF143 PRDM10 KLF8 ZNF639 ETV4 ENSG00000267747 PIR45394 GC17P043522 DHX8 GC17P043560
GH17I043538 Enhancer 0.9 ENCODE dbSUPER 0.4 +18.7 18714 3.1 NCOA3 KLF1 FOXA2 SAP130 ZFP64 KLF17 ZNF121 GATA3 ZNF316 PRDM10 ETV4 RPL29P31 TMEM106A ENSG00000267747 GC17P043522 PIR45394 DHX8 GC17P043560
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR45394 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR45394 Gene

Genomic Locations for PIR45394 Gene
chr17:43,521,512-43,521,542
(GRCh38/hg38)
Size:
31 bases
Orientation:
Plus strand

Genomic View for PIR45394 Gene

Genes around PIR45394 on UCSC Golden Path with GeneCards custom track

PIR45394 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR45394 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR45394 Gene

Proteins for PIR45394 Gene

Post-translational modifications for PIR45394 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR45394 Gene

Domains & Families for PIR45394 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR45394 Gene

Function for PIR45394 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR45394 Gene

Localization for PIR45394 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR45394 Gene

Pathways & Interactions for PIR45394 Gene

SuperPathways for PIR45394 Gene

No Data Available

Interacting Proteins for PIR45394 Gene

Gene Ontology (GO) - Biological Process for PIR45394 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR45394 Gene

Drugs & Compounds for PIR45394 Gene

No Compound Related Data Available

Transcripts for PIR45394 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR45394 Gene

No ASD Table

Relevant External Links for PIR45394 Gene

GeneLoc Exon Structure for
PIR45394

No data available for mRNA/cDNA for PIR45394 Gene

Expression for PIR45394 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR45394 Gene

Orthologs for PIR45394 Gene

No data available for Orthologs and Evolution for PIR45394 Gene

Paralogs for PIR45394 Gene

No data available for Paralogs for PIR45394 Gene

Variants for PIR45394 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR45394 Gene

Disorders for PIR45394 Gene

No disorders were found for PIR45394 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR45394 Gene

Publications for PIR45394 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR45394 Gene

Sources for PIR45394 Gene

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