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Aliases for PIR45109 Gene

Subcategory (RNA class) for PIR45109 Gene

piRNA

Quality Score for this RNA gene is

24

Aliases for PIR45109 Gene

No Aliases found

ORGUL Members for PIR45109 Gene

Previous GeneCards Identifiers for PIR45109 Gene

  • GC19P035400
  • GC19P034954
  • GC19P035049
  • GC19P036992
  • GC19P035142
  • GC19P035246
  • GC19P035565
  • GC19P036191
  • GC19P036380
  • GC19P036544
  • GC19P036712
  • GC19P036856

No data available for External Ids for PIR45109 Gene

Summaries for PIR45109 Gene

GeneCards Summary for PIR45109 Gene

PIR45109 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR45109 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for PIR45109

Additional gene information for PIR45109 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR45109 Gene

Genomics for PIR45109 Gene

GeneHancer (GH) Regulatory Elements for PIR45109 Gene

Promoters and enhancers for PIR45109 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J034905 Enhancer 0.5 Ensembl 600.7 -1.1 -1113 5.8 EZH2 ATF2 ZBTB33 POLR2A CBFA2T3 GC19P037286 GC19P037306 GC19P037326 GC19P037339 PIR33654 PIR33760 PIR33849 PIR44925 PIR34071 PIR45109
GH19J034920 Enhancer 1 Ensembl 0.4 +11.3 11339 0.9 CC2D1A CBFA2T2 ZNF148 GTF2F1 CDC5L YY1 TRIM24 EGR1 SMARCA4 MTA1 ZNF30 KMT2B HAUS5 TMEM147-AS1 LSM14A KIAA0355 U2AF1L4 ZNF792 PROSER3 RBM42
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR45109 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR45109 Gene

Genomic Locations for PIR45109 Gene
chr19:34,909,214-34,909,244
(GRCh38/hg38)
Size:
31 bases
Orientation:
Plus strand
chr19:35,400,118-35,400,148
(GRCh37/hg19)
Size:
31 bases
Orientation:
Plus strand

Genomic View for PIR45109 Gene

Genes around PIR45109 on UCSC Golden Path with GeneCards custom track

PIR45109 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR45109 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR45109 Gene

ORGUL Member Location for PIR45109 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR45109 Gene

Proteins for PIR45109 Gene

Post-translational modifications for PIR45109 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR45109 Gene

Domains & Families for PIR45109 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR45109 Gene

Function for PIR45109 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR45109 Gene

Localization for PIR45109 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR45109 Gene

Pathways & Interactions for PIR45109 Gene

PathCards logo

SuperPathways for PIR45109 Gene

No Data Available

Interacting Proteins for PIR45109 Gene

Gene Ontology (GO) - Biological Process for PIR45109 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR45109 Gene

Drugs & Compounds for PIR45109 Gene

No Compound Related Data Available

Transcripts for PIR45109 Gene

fRNAdb Secondary structures for PIR45109 Gene

  • FR129002

Alternative Splicing Database (ASD) splice patterns (SP) for PIR45109 Gene

No ASD Table

Relevant External Links for PIR45109 Gene

GeneLoc Exon Structure for
PIR45109

No data available for mRNA/cDNA for PIR45109 Gene

Expression for PIR45109 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR45109 Gene

Orthologs for PIR45109 Gene

No data available for Orthologs and Evolution for PIR45109 Gene

Paralogs for PIR45109 Gene

No data available for Paralogs for PIR45109 Gene

Variants for PIR45109 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR45109 Gene

Disorders for PIR45109 Gene

No disorders were found for PIR45109 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR45109 Gene

Publications for PIR45109 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for PIR45109 Gene

Products for PIR45109 Gene

Sources for PIR45109 Gene

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