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Aliases for PIR43912 Gene

Subcategory (RNA class) for PIR43912 Gene

piRNA

Quality Score for this RNA gene is

24

Aliases for PIR43912 Gene

No Aliases found

ORGUL Members for PIR43912 Gene

Previous GeneCards Identifiers for PIR43912 Gene

  • GC22M038770
  • GC22M038399
  • GC22M038504
  • GC22M042759
  • GC22M038812
  • GC22M039932
  • GC22M040620
  • GC22M041062
  • GC22M041463
  • GC22M041874
  • GC22M042302
  • GC22M042654

No data available for External Ids for PIR43912 Gene

Summaries for PIR43912 Gene

GeneCards Summary for PIR43912 Gene

PIR43912 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR43912 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

View fRNAdb secondary structures for PIR43912

Additional gene information for PIR43912 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR43912 Gene

Genomics for PIR43912 Gene

GeneHancer (GH) Regulatory Elements for PIR43912 Gene

Promoters and enhancers for PIR43912 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J038373 Enhancer 0.9 Ensembl ENCODE dbSUPER 600.7 +0.2 214 2.5 ZNF687 RELA IKZF1 NFIC EBF1 GC22M042978 GC22M043067 PIR43912 GC22M043506 TPTEP2 TPTEP2-CSNK1E CSNK1E
GH22J038353 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.3 +21.3 21302 1.4 HDGF CTCF ZNF121 SP5 KLF14 RAD21 GLIS2 ZBTB8A LEF1 ZNF143 TPTEP2 GC22M042978 GC22M043067 GC22M043506 PIR43912 CSNK1E TPTEP2-CSNK1E
GH22J038335 Promoter/Enhancer 1.3 EPDnew ENCODE dbSUPER 0.3 +38.4 38400 1.5 KLF14 GLIS2 ZBTB8A PRDM10 ZEB2 POLR2A SP2 ZBTB20 ZEB1 VEZF1 CSNK1E TMEM184B KCNJ4 KDELR3 PIR43912 GC22M043506 GC22M043067 GC22M042978 TPTEP2 TPTEP2-CSNK1E
GH22J038389 Promoter/Enhancer 0.8 Ensembl dbSUPER 0.4 -13.6 -13620 0.4 PRDM1 ENSG00000229955 TPTEP2-CSNK1E GC22M042978 GC22M043067 GC22M043506 TPTEP2 PIR43912
GH22J038350 Enhancer 1 Ensembl ENCODE 0.3 +23.6 23636 1.5 ELF3 KAT8 CREB1 RXRB POLR2A GABPA SAP130 MIER3 KDM6A GABPB1 TPTEP2 GC22M042978 GC22M043067 GC22M043506 PIR43912 CSNK1E TPTEP2-CSNK1E
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR43912 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR43912 Gene

Genomic Locations for PIR43912 Gene
chr22:38,374,949-38,374,981
(GRCh38/hg38)
Size:
33 bases
Orientation:
Minus strand
chr22:38,770,954-38,770,986
(GRCh37/hg19)
Size:
33 bases
Orientation:
Minus strand

Genomic View for PIR43912 Gene

Genes around PIR43912 on UCSC Golden Path with GeneCards custom track

PIR43912 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR43912 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for PIR43912 Gene

ORGUL Member Location for PIR43912 gene

No data available for Cytogenetic band and RefSeq DNA sequence for PIR43912 Gene

Proteins for PIR43912 Gene

Post-translational modifications for PIR43912 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR43912 Gene

Domains & Families for PIR43912 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR43912 Gene

Function for PIR43912 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR43912 Gene

Localization for PIR43912 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR43912 Gene

Pathways & Interactions for PIR43912 Gene

PathCards logo

SuperPathways for PIR43912 Gene

No Data Available

Interacting Proteins for PIR43912 Gene

Gene Ontology (GO) - Biological Process for PIR43912 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR43912 Gene

Drugs & Compounds for PIR43912 Gene

No Compound Related Data Available

Transcripts for PIR43912 Gene

fRNAdb Secondary structures for PIR43912 Gene

  • FR017003

Alternative Splicing Database (ASD) splice patterns (SP) for PIR43912 Gene

No ASD Table

Relevant External Links for PIR43912 Gene

GeneLoc Exon Structure for
PIR43912

No data available for mRNA/cDNA for PIR43912 Gene

Expression for PIR43912 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR43912 Gene

Orthologs for PIR43912 Gene

No data available for Orthologs and Evolution for PIR43912 Gene

Paralogs for PIR43912 Gene

No data available for Paralogs for PIR43912 Gene

Variants for PIR43912 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR43912 Gene

Disorders for PIR43912 Gene

No disorders were found for PIR43912 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR43912 Gene

Publications for PIR43912 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for PIR43912 Gene

Products for PIR43912 Gene

Sources for PIR43912 Gene

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