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Aliases for PIR43904 Gene

Subcategory (RNA class) for PIR43904 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR43904 Gene

No Aliases found

ORGUL Members for PIR43904 Gene

Previous GeneCards Identifiers for PIR43904 Gene

  • GC12P110354

No data available for External Ids for PIR43904 Gene

Summaries for PIR43904 Gene

GeneCards Summary for PIR43904 Gene

PIR43904 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR43904 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR43904 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR43904 Gene

Genomics for PIR43904 Gene

GeneHancer (GH) Regulatory Elements for PIR43904 Gene

Promoters and enhancers for PIR43904 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J109915 Enhancer 0.5 ENCODE 600.7 -1.5 -1478 0.2 MYC CTBP1 ZFX ZNF217 CTCF ZNF687 MNT PIR43904 GLTP ENSG00000249094 TRPV4 TCHP
GH12J109899 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 0.4 -16.0 -15968 2.7 MTA3 ELF3 ZFX MNT NKRF MLLT1 ZNF121 CEBPG GTF2F1 ZNF687 TCHP IFT81 GLTP ENSG00000249094 UBE3B GPN3 TRPV4 PIR43904
GH12J109911 Enhancer 0.7 ENCODE 0.4 -5.7 -5738 0.1 CTCF ZNF644 REST KLF7 MGA KLF4 USF1 MNT SIN3A CREM ENSG00000249094 GLTP TRPV4 PIR43904 TCHP
GH12J109892 Enhancer 0.9 ENCODE dbSUPER 0.3 -23.6 -23620 1.8 ZNF121 MAFK IKZF1 ZNF316 RUNX3 ZNF266 NR2F1 NFIC ZNF16 EBF1 UBE3B RNU4-32P ALKBH2 IFT81 GLTP TCHP PIR43904
GH12J109887 Enhancer 0.9 ENCODE dbSUPER 0.3 -28.0 -27951 3 MAFK CREB1 IKZF1 PRDM10 CEBPB JUN SP1 CTBP1 JUND ZNF318 TRPV4 GLTP TCHP ENSG00000249094 PIR43904
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR43904 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR43904 Gene

Genomic Locations for PIR43904 Gene
chr12:109,916,829-109,916,855
(GRCh38/hg38)
Size:
27 bases
Orientation:
Plus strand
chr12:110,354,634-110,354,660
(GRCh37/hg19)
Size:
27 bases
Orientation:
Plus strand

Genomic View for PIR43904 Gene

Genes around PIR43904 on UCSC Golden Path with GeneCards custom track

PIR43904 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR43904 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR43904 Gene

Proteins for PIR43904 Gene

Post-translational modifications for PIR43904 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR43904 Gene

Domains & Families for PIR43904 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR43904 Gene

Function for PIR43904 Gene

Phenotypes From GWAS Catalog for PIR43904 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR43904 Gene

Localization for PIR43904 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR43904 Gene

Pathways & Interactions for PIR43904 Gene

PathCards logo

SuperPathways for PIR43904 Gene

No Data Available

Interacting Proteins for PIR43904 Gene

Gene Ontology (GO) - Biological Process for PIR43904 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR43904 Gene

Drugs & Compounds for PIR43904 Gene

No Compound Related Data Available

Transcripts for PIR43904 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR43904 Gene

No ASD Table

Relevant External Links for PIR43904 Gene

GeneLoc Exon Structure for
PIR43904

No data available for mRNA/cDNA for PIR43904 Gene

Expression for PIR43904 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR43904 Gene

Orthologs for PIR43904 Gene

No data available for Orthologs and Evolution for PIR43904 Gene

Paralogs for PIR43904 Gene

No data available for Paralogs for PIR43904 Gene

Variants for PIR43904 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR43904 Gene

Disorders for PIR43904 Gene

No disorders were found for PIR43904 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR43904 Gene

Publications for PIR43904 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for PIR43904 Gene

Products for PIR43904 Gene

Sources for PIR43904 Gene

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