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Aliases for PIR43816 Gene

Subcategory (RNA class) for PIR43816 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR43816 Gene

No Aliases found

ORGUL Members for PIR43816 Gene

Previous GeneCards Identifiers for PIR43816 Gene

  • GC20P035860

No data available for External Ids for PIR43816 Gene

Summaries for PIR43816 Gene

GeneCards Summary for PIR43816 Gene

PIR43816 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR43816 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR43816 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR43816 Gene

Genomics for PIR43816 Gene

GeneHancer (GH) Regulatory Elements for PIR43816 Gene

Promoters and enhancers for PIR43816 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J037230 Enhancer 0.5 ENCODE 600.7 -0.3 -278 2.7 ZNF121 MAFK ZNF316 SCRT2 RCOR1 PIR43816 GHRH RPN2 GC20M037216
GH20J037233 Enhancer 0.3 ENCODE 600.7 +1.6 1551 0.5 POLR2A PIR43816 GHRH RPN2 GC20P037244
GH20J037227 Enhancer 0.7 Ensembl ENCODE 0.7 -3.5 -3474 2.9 SCRT2 ZNF207 FOXA2 SCRT1 GATA3 SIN3A POU5F1 GHRH RPN2 MANBAL MROH8 PIR43816 GC20M037216
GH20J037243 Enhancer 0.7 Ensembl ENCODE 0.4 +11.1 11065 0.4 SP1 ZNF207 ZNF143 CTCF HNF4A GC20P037244 MROH8 PIR43816 GC20M037240
GH20J037235 Enhancer 0.3 ENCODE 0.7 +2.8 2792 0.2 RCOR1 GHRH PIR43816 GC20P037244 RPN2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR43816 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR43816 Gene

Genomic Locations for PIR43816 Gene
chr20:37,232,501-37,232,529
(GRCh38/hg38)
Size:
29 bases
Orientation:
Plus strand
chr20:35,860,904-35,860,932
(GRCh37/hg19)
Size:
29 bases
Orientation:
Plus strand

Genomic View for PIR43816 Gene

Genes around PIR43816 on UCSC Golden Path with GeneCards custom track

PIR43816 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR43816 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR43816 Gene

Proteins for PIR43816 Gene

Post-translational modifications for PIR43816 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR43816 Gene

Domains & Families for PIR43816 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR43816 Gene

Function for PIR43816 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR43816 Gene

Localization for PIR43816 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR43816 Gene

Pathways & Interactions for PIR43816 Gene

PathCards logo

SuperPathways for PIR43816 Gene

No Data Available

Interacting Proteins for PIR43816 Gene

Gene Ontology (GO) - Biological Process for PIR43816 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR43816 Gene

Drugs & Compounds for PIR43816 Gene

No Compound Related Data Available

Transcripts for PIR43816 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR43816 Gene

No ASD Table

Relevant External Links for PIR43816 Gene

GeneLoc Exon Structure for
PIR43816

No data available for mRNA/cDNA for PIR43816 Gene

Expression for PIR43816 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR43816 Gene

Orthologs for PIR43816 Gene

No data available for Orthologs and Evolution for PIR43816 Gene

Paralogs for PIR43816 Gene

No data available for Paralogs for PIR43816 Gene

Variants for PIR43816 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR43816 Gene

Disorders for PIR43816 Gene

No disorders were found for PIR43816 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR43816 Gene

Publications for PIR43816 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for PIR43816 Gene

Products for PIR43816 Gene

Sources for PIR43816 Gene

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