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Aliases for PIR43800 Gene

Subcategory (RNA class) for PIR43800 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR43800 Gene

No Aliases found

ORGUL Members for PIR43800 Gene

Previous GeneCards Identifiers for PIR43800 Gene

  • GC10M097179

No data available for External Ids for PIR43800 Gene

Summaries for PIR43800 Gene

GeneCards Summary for PIR43800 Gene

PIR43800 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR43800 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR43800 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR43800 Gene

Genomics for PIR43800 Gene

GeneHancer (GH) Regulatory Elements for PIR43800 Gene

Promoters and enhancers for PIR43800 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J095418 Enhancer 0.7 Ensembl dbSUPER 600.7 +0.5 456 1.2 RXRA NR2F2 HNF4A HNF4G PIR43800 GC10M095395 SORBS1
GH10J095420 Enhancer 0.4 Ensembl dbSUPER 600.7 -0.8 -844 0.6 PIR43800 GC10M095525 SORBS1
GH10J095414 Promoter/Enhancer 1.4 VISTA Ensembl ENCODE dbSUPER 0.4 +5.6 5590 4.5 DPF2 REST EHMT2 ZKSCAN1 EBF1 MIER2 PDLIM1 GC10M095395 PIR43800 SORBS1
GH10J095444 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -26.0 -26044 7.4 ZNF652 ELF3 CTCF YY1 SP7 SP1 MZF1 RAD21 RXRA ZNF600 SORBS1 PDLIM1 PIR43800 GC10M095525
GH10J095429 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -10.2 -10244 2.2 CC2D1A CTCF ZSCAN21 SP1 CREM RAD21 CREB1 RXRA ARID2 GATAD2A PIR43800 GC10M095525 SORBS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR43800 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR43800 Gene

Genomic Locations for PIR43800 Gene
chr10:95,419,830-95,419,857
(GRCh38/hg38)
Size:
28 bases
Orientation:
Minus strand
chr10:97,179,587-97,179,614
(GRCh37/hg19)
Size:
28 bases
Orientation:
Minus strand

Genomic View for PIR43800 Gene

Genes around PIR43800 on UCSC Golden Path with GeneCards custom track

PIR43800 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR43800 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR43800 Gene

Proteins for PIR43800 Gene

Post-translational modifications for PIR43800 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR43800 Gene

Domains & Families for PIR43800 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR43800 Gene

Function for PIR43800 Gene

Phenotypes From GWAS Catalog for PIR43800 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR43800 Gene

Localization for PIR43800 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR43800 Gene

Pathways & Interactions for PIR43800 Gene

PathCards logo

SuperPathways for PIR43800 Gene

No Data Available

Interacting Proteins for PIR43800 Gene

Gene Ontology (GO) - Biological Process for PIR43800 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR43800 Gene

Drugs & Compounds for PIR43800 Gene

No Compound Related Data Available

Transcripts for PIR43800 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR43800 Gene

No ASD Table

Relevant External Links for PIR43800 Gene

GeneLoc Exon Structure for
PIR43800

No data available for mRNA/cDNA for PIR43800 Gene

Expression for PIR43800 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR43800 Gene

Orthologs for PIR43800 Gene

No data available for Orthologs and Evolution for PIR43800 Gene

Paralogs for PIR43800 Gene

No data available for Paralogs for PIR43800 Gene

Variants for PIR43800 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR43800 Gene

Disorders for PIR43800 Gene

No disorders were found for PIR43800 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR43800 Gene

Publications for PIR43800 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for PIR43800 Gene

Products for PIR43800 Gene

Sources for PIR43800 Gene

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