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Aliases for PIR43516 Gene

Subcategory (RNA class) for PIR43516 Gene

piRNA

Quality Score for this RNA gene is

20

Aliases for PIR43516 Gene

No Aliases found

ORGUL Members for PIR43516 Gene

Previous GeneCards Identifiers for PIR43516 Gene

  • GC01M121129

No data available for External Ids for PIR43516 Gene

Summaries for PIR43516 Gene

GeneCards Summary for PIR43516 Gene

PIR43516 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR43516 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR43516 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR43516 Gene

Genomics for PIR43516 Gene

GeneHancer (GH) Regulatory Elements for PIR43516 Gene

Promoters and enhancers for PIR43516 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J121384 Enhancer 0.8 Ensembl ENCODE dbSUPER 1000.6 +1.8 1839 3 ATF2 ZNF189 PIR43395 PIR43516 ENSG00000227082 SRGAP2-AS1 SRGAP2C
GH01J121387 Enhancer 0.2 dbSUPER 1000.6 -0.2 -208 0.8 GC01P121388 PIR43516 PIR38841 SRGAP2-AS1 SRGAP2C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR43516 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR43516 Gene

Genomic Locations for PIR43516 Gene
chr1:121,387,514-121,387,540
(GRCh38/hg38)
Size:
27 bases
Orientation:
Minus strand
chr1:121,129,375-121,129,401
(GRCh37/hg19)
Size:
27 bases
Orientation:
Minus strand

Genomic View for PIR43516 Gene

Genes around PIR43516 on UCSC Golden Path with GeneCards custom track

PIR43516 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR43516 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR43516 Gene

Proteins for PIR43516 Gene

Post-translational modifications for PIR43516 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR43516 Gene

Domains & Families for PIR43516 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR43516 Gene

Function for PIR43516 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR43516 Gene

Localization for PIR43516 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR43516 Gene

Pathways & Interactions for PIR43516 Gene

PathCards logo

SuperPathways for PIR43516 Gene

No Data Available

Interacting Proteins for PIR43516 Gene

Gene Ontology (GO) - Biological Process for PIR43516 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR43516 Gene

Drugs & Compounds for PIR43516 Gene

No Compound Related Data Available

Transcripts for PIR43516 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR43516 Gene

No ASD Table

Relevant External Links for PIR43516 Gene

GeneLoc Exon Structure for
PIR43516

No data available for mRNA/cDNA for PIR43516 Gene

Expression for PIR43516 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR43516 Gene

Orthologs for PIR43516 Gene

No data available for Orthologs and Evolution for PIR43516 Gene

Paralogs for PIR43516 Gene

No data available for Paralogs for PIR43516 Gene

Variants for PIR43516 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR43516 Gene

Disorders for PIR43516 Gene

No disorders were found for PIR43516 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR43516 Gene

Publications for PIR43516 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for PIR43516 Gene

Products for PIR43516 Gene

Sources for PIR43516 Gene

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