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Aliases for PIR42817 Gene

Subcategory (RNA class) for PIR42817 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR42817 Gene

No Aliases found

ORGUL Members for PIR42817 Gene

Previous GeneCards Identifiers for PIR42817 Gene

  • GC21M046153

No data available for External Ids for PIR42817 Gene

Summaries for PIR42817 Gene

GeneCards Summary for PIR42817 Gene

PIR42817 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR42817 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR42817 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR42817 Gene

Genomics for PIR42817 Gene

GeneHancer (GH) Regulatory Elements for PIR42817 Gene

Promoters and enhancers for PIR42817 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J044752 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE 0.4 -19.3 -19313 1.4 MYC FOSL2 CREB1 GATAD2B ZBTB33 TARDBP CTCF CTBP1 MNT SCRT2 TSPEAR TSPEAR-AS2 KRTAP10-2 KRTAP10-1 TSPEAR-AS1 UBE2G2 LINC01424 PIR42817 GC21M046951
GH21J044708 Promoter/Enhancer 1.3 EPDnew Ensembl ENCODE 0.3 +22.0 21986 7.6 PKNOX1 POLR2A EZH2 ZFHX2 SIN3A GATA3 CTCF ZNF143 FOS GLIS1 TSPEAR TSPEAR-AS2 LRRC3 LINC01678 PIR42817
GH21J044764 Enhancer 1.3 FANTOM5 Ensembl ENCODE 0.3 -32.4 -32413 2.8 ZNF148 MYC KLF14 EGR1 CREB1 GLIS2 ZIC2 TARDBP CTBP1 GTF2F1 UBE2G2 PWP2 GC21M046951 PIR42817
GH21J044730 Enhancer 0.6 Ensembl 0.7 +2.5 2486 0.6 EGR1 ZNF318 ESRRA NR2C2 CREM IKZF1 EGR2 CBFA2T3 PIR42817 TSPEAR
GH21J044761 Enhancer 0.9 Ensembl ENCODE 0.3 -27.5 -27514 1.4 CTCF KLF14 ZIC2 MNT KLF9 EGR1 ZKSCAN1 RAD21 KLF8 ZFHX2 UBE2G2 GC21M046951 PIR42817
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR42817 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR42817 Gene

Genomic Locations for PIR42817 Gene
chr21:44,733,561-44,733,587
(GRCh38/hg38)
Size:
27 bases
Orientation:
Minus strand
chr21:46,153,476-46,153,502
(GRCh37/hg19)
Size:
27 bases
Orientation:
Minus strand

Genomic View for PIR42817 Gene

Genes around PIR42817 on UCSC Golden Path with GeneCards custom track

PIR42817 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR42817 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR42817 Gene

Proteins for PIR42817 Gene

Post-translational modifications for PIR42817 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR42817 Gene

Domains & Families for PIR42817 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR42817 Gene

Function for PIR42817 Gene

Phenotypes From GWAS Catalog for PIR42817 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR42817 Gene

Localization for PIR42817 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR42817 Gene

Pathways & Interactions for PIR42817 Gene

PathCards logo

SuperPathways for PIR42817 Gene

No Data Available

Interacting Proteins for PIR42817 Gene

Gene Ontology (GO) - Biological Process for PIR42817 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR42817 Gene

Drugs & Compounds for PIR42817 Gene

No Compound Related Data Available

Transcripts for PIR42817 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR42817 Gene

No ASD Table

Relevant External Links for PIR42817 Gene

GeneLoc Exon Structure for
PIR42817

No data available for mRNA/cDNA for PIR42817 Gene

Expression for PIR42817 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR42817 Gene

Orthologs for PIR42817 Gene

No data available for Orthologs and Evolution for PIR42817 Gene

Paralogs for PIR42817 Gene

No data available for Paralogs for PIR42817 Gene

Variants for PIR42817 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR42817 Gene

Disorders for PIR42817 Gene

No disorders were found for PIR42817 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR42817 Gene

Publications for PIR42817 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for PIR42817 Gene

Products for PIR42817 Gene

Sources for PIR42817 Gene

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