Free for academic non-profit institutions. Other users need a Commercial license

Aliases for PIR42792 Gene

Subcategory (RNA class) for PIR42792 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR42792 Gene

No Aliases found

ORGUL Members for PIR42792 Gene

Previous GeneCards Identifiers for PIR42792 Gene

  • GC22P035744

No data available for External Ids for PIR42792 Gene

Summaries for PIR42792 Gene

GeneCards Summary for PIR42792 Gene

PIR42792 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR42792 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR42792 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR42792 Gene

Genomics for PIR42792 Gene

GeneHancer (GH) Regulatory Elements for PIR42792 Gene

Promoters and enhancers for PIR42792 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J035349 Enhancer 1 ENCODE 0.7 +4.6 4632 4.9 CC2D1A ELF3 CTCF ZNF687 SP7 PPARG SP5 KLF14 MLLT1 RAD21 TOM1 HMOX1 PIR42792 ENSG00000282602 GC22P035300
GH22J035343 Enhancer 0.7 Ensembl 0.7 -3.8 -3783 0.8 ZNF473 EGR1 ZEB2 ZNF776 ZNF148 ZNF747 ZNF140 ZNF157 ZEB1 ZNF266 HMGXB4 MCM5 PIR42792 MIR6069 GC22P035300 TOM1
GH22J035362 Enhancer 1 ENCODE 0.4 +16.7 16730 2.2 ELF3 ZNF121 CEBPG ZNF384 ZSCAN21 SP7 PRDM1 SMARCA4 KAT8 GLIS2 ENSG00000282602 PIR42792 GC22P035300
GH22J035366 Enhancer 0.6 ENCODE 0.3 +20.3 20300 1.2 IKZF1 BACH1 TRIM22 ZNF341 DPF2 HDGF NBN EBF1 RB1 ATF7 ENSG00000282602 PIR42792
GH22J035368 Promoter 0.6 Ensembl 0.3 +21.1 21117 0.2 KLF1 ENSG00000282602 PIR42792
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR42792 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR42792 Gene

Genomic Locations for PIR42792 Gene
chr22:35,347,184-35,347,213
(GRCh38/hg38)
Size:
30 bases
Orientation:
Plus strand
chr22:35,743,177-35,743,206
(GRCh37/hg19)
Size:
30 bases
Orientation:
Plus strand

Genomic View for PIR42792 Gene

Genes around PIR42792 on UCSC Golden Path with GeneCards custom track

PIR42792 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR42792 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR42792 Gene

Proteins for PIR42792 Gene

Post-translational modifications for PIR42792 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR42792 Gene

Domains & Families for PIR42792 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR42792 Gene

Function for PIR42792 Gene

Phenotypes From GWAS Catalog for PIR42792 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR42792 Gene

Localization for PIR42792 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR42792 Gene

Pathways & Interactions for PIR42792 Gene

PathCards logo

SuperPathways for PIR42792 Gene

No Data Available

Interacting Proteins for PIR42792 Gene

Gene Ontology (GO) - Biological Process for PIR42792 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR42792 Gene

Drugs & Compounds for PIR42792 Gene

No Compound Related Data Available

Transcripts for PIR42792 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR42792 Gene

No ASD Table

Relevant External Links for PIR42792 Gene

GeneLoc Exon Structure for
PIR42792

No data available for mRNA/cDNA for PIR42792 Gene

Expression for PIR42792 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR42792 Gene

Orthologs for PIR42792 Gene

No data available for Orthologs and Evolution for PIR42792 Gene

Paralogs for PIR42792 Gene

No data available for Paralogs for PIR42792 Gene

Variants for PIR42792 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR42792 Gene

Disorders for PIR42792 Gene

No disorders were found for PIR42792 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR42792 Gene

Publications for PIR42792 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for PIR42792 Gene

Products for PIR42792 Gene

Sources for PIR42792 Gene

Content
Loading form....