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Aliases for PIR42690 Gene

Subcategory (RNA class) for PIR42690 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR42690 Gene

No Aliases found

ORGUL Members for PIR42690 Gene

No data available for External Ids for PIR42690 Gene

Summaries for PIR42690 Gene

GeneCards Summary for PIR42690 Gene

PIR42690 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR42690 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR42690 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR42690 Gene

Genomics for PIR42690 Gene

GeneHancer (GH) Regulatory Elements for PIR42690 Gene

Promoters and enhancers for PIR42690 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J030004 Enhancer 1 Ensembl ENCODE 600.7 -0.3 -322 2 HDGF CTCF RAD21 CREB1 GLIS2 ZNF600 ZIC2 REST TRIM22 PATZ1 PIR42690 YPEL3 INO80E HIRIP3 DOC2A
GH16J030008 Promoter 1.7 EPDnew Ensembl 0.4 +5.9 5879 1.4 ZBTB7A SP7 KLF14 GLIS2 PRDM10 ZIC2 TARDBP RFX1 ZSCAN4 KLF7 DOC2A YPEL3 INO80E ZNF785 SRCAP SMG1P2 SMG1P5 SLX1A ZNF764 BCL7C
GH16J030000 Promoter/Enhancer 1 Ensembl ENCODE 0.7 -4.4 -4437 1 USF1 CTCF KLF1 EGR2 YPEL3 HIRIP3 PIR42690 INO80E
GH16J030012 Promoter 0.6 EPDnew 0.4 +6.9 6927 0.1 ZNF473 DOC2A ZNF689 ZNF688 NPIPB10P MIR762HG LOC730183 PHKG2 SETD1A FBRS GC16P030017
GH16J030013 Enhancer 0.3 Ensembl 0.4 +7.9 7879 0.2 ZNF335 GC16P030017 PIR42690 DOC2A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR42690 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR42690 Gene

Genomic Locations for PIR42690 Gene
chr16:30,005,422-30,005,448
(GRCh38/hg38)
Size:
27 bases
Orientation:
Plus strand
chr16:30,016,743-30,016,769
(GRCh37/hg19)
Size:
27 bases
Orientation:
Plus strand

Genomic View for PIR42690 Gene

Genes around PIR42690 on UCSC Golden Path with GeneCards custom track

PIR42690 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR42690 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR42690 Gene

Proteins for PIR42690 Gene

Post-translational modifications for PIR42690 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR42690 Gene

Domains & Families for PIR42690 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR42690 Gene

Function for PIR42690 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR42690 Gene

Localization for PIR42690 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR42690 Gene

Pathways & Interactions for PIR42690 Gene

PathCards logo

SuperPathways for PIR42690 Gene

No Data Available

Interacting Proteins for PIR42690 Gene

Gene Ontology (GO) - Biological Process for PIR42690 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR42690 Gene

Drugs & Compounds for PIR42690 Gene

No Compound Related Data Available

Transcripts for PIR42690 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR42690 Gene

No ASD Table

Relevant External Links for PIR42690 Gene

GeneLoc Exon Structure for
PIR42690

No data available for mRNA/cDNA for PIR42690 Gene

Expression for PIR42690 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR42690 Gene

Orthologs for PIR42690 Gene

No data available for Orthologs and Evolution for PIR42690 Gene

Paralogs for PIR42690 Gene

No data available for Paralogs for PIR42690 Gene

Variants for PIR42690 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR42690 Gene

Disorders for PIR42690 Gene

No disorders were found for PIR42690 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR42690 Gene

Publications for PIR42690 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for PIR42690 Gene

Products for PIR42690 Gene

Sources for PIR42690 Gene

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