Free for academic non-profit institutions. Other users need a Commercial license

Aliases for PIR42641 Gene

Subcategory (RNA class) for PIR42641 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR42641 Gene

No Aliases found

ORGUL Members for PIR42641 Gene

Previous GeneCards Identifiers for PIR42641 Gene

  • GC19M014313

No data available for External Ids for PIR42641 Gene

Summaries for PIR42641 Gene

GeneCards Summary for PIR42641 Gene

PIR42641 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR42641 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR42641 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR42641 Gene

Genomics for PIR42641 Gene

GeneHancer (GH) Regulatory Elements for PIR42641 Gene

Promoters and enhancers for PIR42641 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J014200 Enhancer 1.2 Ensembl ENCODE dbSUPER 600.7 +0.5 543 1 CC2D1A ZNF121 CTCF RAD21 ARID2 ZNF143 REST TRIM22 PATZ1 ZNF24 PIR42641 ADGRL1 GC19M014175
GH19J014201 Enhancer 0.5 dbSUPER 600.7 -0.7 -718 0.6 ZEB2 ZEB1 ZNF623 FOS PIR42641 ADGRL1
GH19J014203 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 0.7 -2.1 -2108 0.7 ZBTB33 ZNF600 ZIC2 NR2F1 ZFHX2 WT1 GLIS1 EGR2 PIR42641 ADGRL1
GH19J014196 Enhancer 1 ENCODE dbSUPER 0.7 +4.8 4824 0.1 ZNF600 CTCF ZNF629 ZNF501 TRIM22 RCOR1 CTBP1 HDAC2 ZNF580 ZBTB17 SNRPGP15 PIR42641 ADGRL1 GC19M014175
GH19J014195 Enhancer 1 ENCODE dbSUPER 0.4 +5.0 5034 0.2 CTCF ZNF600 ZNF143 REST ZNF629 TRIM22 ZNF501 MTA2 RCOR1 CTBP1 SNRPGP15 PIR42641 GC19M014175 ADGRL1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR42641 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR42641 Gene

Genomic Locations for PIR42641 Gene
chr19:14,201,212-14,201,238
(GRCh38/hg38)
Size:
27 bases
Orientation:
Minus strand
chr19:14,312,024-14,312,050
(GRCh37/hg19)
Size:
27 bases
Orientation:
Minus strand

Genomic View for PIR42641 Gene

Genes around PIR42641 on UCSC Golden Path with GeneCards custom track

PIR42641 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR42641 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR42641 Gene

Proteins for PIR42641 Gene

Post-translational modifications for PIR42641 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR42641 Gene

Domains & Families for PIR42641 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR42641 Gene

Function for PIR42641 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR42641 Gene

Localization for PIR42641 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR42641 Gene

Pathways & Interactions for PIR42641 Gene

PathCards logo

SuperPathways for PIR42641 Gene

No Data Available

Interacting Proteins for PIR42641 Gene

Gene Ontology (GO) - Biological Process for PIR42641 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR42641 Gene

Drugs & Compounds for PIR42641 Gene

No Compound Related Data Available

Transcripts for PIR42641 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR42641 Gene

No ASD Table

Relevant External Links for PIR42641 Gene

GeneLoc Exon Structure for
PIR42641

No data available for mRNA/cDNA for PIR42641 Gene

Expression for PIR42641 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR42641 Gene

Orthologs for PIR42641 Gene

No data available for Orthologs and Evolution for PIR42641 Gene

Paralogs for PIR42641 Gene

No data available for Paralogs for PIR42641 Gene

Variants for PIR42641 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR42641 Gene

Disorders for PIR42641 Gene

No disorders were found for PIR42641 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR42641 Gene

Publications for PIR42641 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for PIR42641 Gene

Products for PIR42641 Gene

Sources for PIR42641 Gene

Content
Loading form....