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Aliases for PIR42560 Gene

Subcategory (RNA class) for PIR42560 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR42560 Gene

No Aliases found

ORGUL Members for PIR42560 Gene

No data available for External Ids for PIR42560 Gene

Summaries for PIR42560 Gene

GeneCards Summary for PIR42560 Gene

PIR42560 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR42560 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR42560 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR42560 Gene

Genomics for PIR42560 Gene

GeneHancer (GH) Regulatory Elements for PIR42560 Gene

Promoters and enhancers for PIR42560 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J028531 Enhancer 1.1 FANTOM5 ENCODE 600.7 -0.5 -520 3.7 CC2D1A SP1 HNF1A PPARG SP5 ZNF644 RXRA IKZF1 ZNF512 CEBPA PIR42560 SULT1A2 TUFM APOBR SGF29 NPIPB7 CLN3 IL27 ENSG00000251417 SULT1A1
GH16J028537 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 0.4 -5.3 -5290 3.3 ZFX ELF3 ZNF148 POLR2A CEBPG ZSCAN21 AHR TFE3 SP7 SP1 NUPR1 SGF29 SULT1A2 TUFM ENSG00000271623 PIR42560
GH16J028525 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE 0.4 +5.4 5388 4.5 ZNF652 ELF3 CEBPG RERE TFE3 SP1 PPARG SP5 ZNF384 ZNF644 IL27 SULT1A2 TUFM CLN3 APOBR NPIPB7 SGF29 ENSG00000251417 PIR42560
GH16J028536 Promoter 0.5 Ensembl 0.7 -3.4 -3365 0.2 PIR42560 NUPR1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR42560 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR42560 Gene

Genomic Locations for PIR42560 Gene
chr16:28,533,109-28,533,136
(GRCh38/hg38)
Size:
28 bases
Orientation:
Minus strand
chr16:28,544,430-28,544,457
(GRCh37/hg19)
Size:
28 bases
Orientation:
Minus strand

Genomic View for PIR42560 Gene

Genes around PIR42560 on UCSC Golden Path with GeneCards custom track

PIR42560 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR42560 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR42560 Gene

Proteins for PIR42560 Gene

Post-translational modifications for PIR42560 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR42560 Gene

Domains & Families for PIR42560 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR42560 Gene

Function for PIR42560 Gene

Phenotypes From GWAS Catalog for PIR42560 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR42560 Gene

Localization for PIR42560 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR42560 Gene

Pathways & Interactions for PIR42560 Gene

PathCards logo

SuperPathways for PIR42560 Gene

No Data Available

Interacting Proteins for PIR42560 Gene

Gene Ontology (GO) - Biological Process for PIR42560 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR42560 Gene

Drugs & Compounds for PIR42560 Gene

No Compound Related Data Available

Transcripts for PIR42560 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR42560 Gene

No ASD Table

Relevant External Links for PIR42560 Gene

GeneLoc Exon Structure for
PIR42560

No data available for mRNA/cDNA for PIR42560 Gene

Expression for PIR42560 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR42560 Gene

Orthologs for PIR42560 Gene

No data available for Orthologs and Evolution for PIR42560 Gene

Paralogs for PIR42560 Gene

No data available for Paralogs for PIR42560 Gene

Variants for PIR42560 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR42560 Gene

Disorders for PIR42560 Gene

No disorders were found for PIR42560 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR42560 Gene

Publications for PIR42560 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for PIR42560 Gene

Products for PIR42560 Gene

Sources for PIR42560 Gene

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