Free for academic non-profit institutions. Other users need a Commercial license

Aliases for PIR42127 Gene

Subcategory (RNA class) for PIR42127 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR42127 Gene

No Aliases found

ORGUL Members for PIR42127 Gene

Previous GeneCards Identifiers for PIR42127 Gene

  • GC11M006618

No data available for External Ids for PIR42127 Gene

Summaries for PIR42127 Gene

GeneCards Summary for PIR42127 Gene

PIR42127 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR42127 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR42127 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR42127 Gene

Genomics for PIR42127 Gene

GeneHancer (GH) Regulatory Elements for PIR42127 Gene

Promoters and enhancers for PIR42127 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J006598 Enhancer 1.1 Ensembl ENCODE dbSUPER 600.7 -1.7 -1702 2.8 SP1 CEBPA JUND YY1 ZBTB33 SAP130 GABPA NFIC RAD21 HNF4A PIR42127 RRP8 MRPL17 ENSG00000241678 ENSG00000255410 PIR55036
GH11J006596 Enhancer 0.2 Ensembl 600.7 +1.4 1381 0.2 PIR42127 RRP8 DNHD1
GH11J006597 Enhancer 0.2 Ensembl 600.7 +0.6 581 0.2 PIR42127 ENSG00000241678 MRPL17 ENSG00000255410 RRP8 DNHD1
GH11J006568 Enhancer 1.1 Ensembl ENCODE 0.3 +28.8 28781 1 CBFA2T2 ZNF148 GTF2F1 BACH1 MCM2 MAFK TRIM24 EGR1 SMARCA4 MTA1 RRP8 ILK MRPL17 ENSG00000254400 ENSG00000241678 APBB1 SMPD1 PIR42127 DNHD1
GH11J006575 Enhancer 0.8 Ensembl ENCODE 0.3 +20.8 20782 2.6 POLR2A PATZ1 ZNF341 NFIC CEBPG CEBPB JUND JUN ATF2 IKZF1 ILK RRP8 ENSG00000254400 ENSG00000254641 TAF10 PIR42127 DNHD1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR42127 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR42127 Gene

Genomic Locations for PIR42127 Gene
chr11:6,597,456-6,597,482
(GRCh38/hg38)
Size:
27 bases
Orientation:
Minus strand
chr11:6,618,686-6,618,712
(GRCh37/hg19)
Size:
27 bases
Orientation:
Minus strand

Genomic View for PIR42127 Gene

Genes around PIR42127 on UCSC Golden Path with GeneCards custom track

PIR42127 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR42127 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR42127 Gene

Proteins for PIR42127 Gene

Post-translational modifications for PIR42127 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR42127 Gene

Domains & Families for PIR42127 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR42127 Gene

Function for PIR42127 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR42127 Gene

Localization for PIR42127 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR42127 Gene

Pathways & Interactions for PIR42127 Gene

PathCards logo

SuperPathways for PIR42127 Gene

No Data Available

Interacting Proteins for PIR42127 Gene

Gene Ontology (GO) - Biological Process for PIR42127 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR42127 Gene

Drugs & Compounds for PIR42127 Gene

No Compound Related Data Available

Transcripts for PIR42127 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR42127 Gene

No ASD Table

Relevant External Links for PIR42127 Gene

GeneLoc Exon Structure for
PIR42127

No data available for mRNA/cDNA for PIR42127 Gene

Expression for PIR42127 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR42127 Gene

Orthologs for PIR42127 Gene

No data available for Orthologs and Evolution for PIR42127 Gene

Paralogs for PIR42127 Gene

No data available for Paralogs for PIR42127 Gene

Variants for PIR42127 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR42127 Gene

Disorders for PIR42127 Gene

No disorders were found for PIR42127 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR42127 Gene

Publications for PIR42127 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for PIR42127 Gene

Products for PIR42127 Gene

Sources for PIR42127 Gene

Content
Loading form....