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Aliases for PIR42100 Gene

Subcategory (RNA class) for PIR42100 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR42100 Gene

No Aliases found

ORGUL Members for PIR42100 Gene

Previous GeneCards Identifiers for PIR42100 Gene

  • GC11P087183

No data available for External Ids for PIR42100 Gene

Summaries for PIR42100 Gene

GeneCards Summary for PIR42100 Gene

PIR42100 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR42100 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR42100 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR42100 Gene

Genomics for PIR42100 Gene

GeneHancer (GH) Regulatory Elements for PIR42100 Gene

Promoters and enhancers for PIR42100 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J087472 Enhancer 0.5 Ensembl ENCODE 600.7 +1.1 1137 1.4 FOS PIR42100 RAB38 ENSG00000255391 GC11P087444
GH11J087469 Enhancer 0.2 Ensembl 0.7 -2.3 -2256 1 PIR42100 GC11P087444
GH11J087444 Enhancer 0.4 Ensembl ENCODE 0.3 -27.2 -27193 1.7 GC11P087444 FZD4 PIR42100
GH11J087466 Enhancer 0.2 ENCODE 0.4 -6.0 -5953 0.2 PIR42100 GC11P087444
GH11J087451 Enhancer 0.2 Ensembl 0.3 -20.7 -20656 1 GC11P087444 PIR42100
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around PIR42100 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR42100 Gene

Genomic Locations for PIR42100 Gene
chr11:87,472,357-87,472,383
(GRCh38/hg38)
Size:
27 bases
Orientation:
Plus strand
chr11:87,183,399-87,183,425
(GRCh37/hg19)
Size:
27 bases
Orientation:
Plus strand

Genomic View for PIR42100 Gene

Genes around PIR42100 on UCSC Golden Path with GeneCards custom track

PIR42100 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR42100 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR42100 Gene

Proteins for PIR42100 Gene

Post-translational modifications for PIR42100 Gene

No Post-translational modifications

No data available for DME Specific Peptides for PIR42100 Gene

Domains & Families for PIR42100 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for PIR42100 Gene

Function for PIR42100 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR42100 Gene

Localization for PIR42100 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR42100 Gene

Pathways & Interactions for PIR42100 Gene

PathCards logo

SuperPathways for PIR42100 Gene

No Data Available

Interacting Proteins for PIR42100 Gene

Gene Ontology (GO) - Biological Process for PIR42100 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR42100 Gene

Drugs & Compounds for PIR42100 Gene

No Compound Related Data Available

Transcripts for PIR42100 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR42100 Gene

No ASD Table

Relevant External Links for PIR42100 Gene

GeneLoc Exon Structure for
PIR42100

No data available for mRNA/cDNA for PIR42100 Gene

Expression for PIR42100 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR42100 Gene

Orthologs for PIR42100 Gene

No data available for Orthologs and Evolution for PIR42100 Gene

Paralogs for PIR42100 Gene

No data available for Paralogs for PIR42100 Gene

Variants for PIR42100 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR42100 Gene

Disorders for PIR42100 Gene

No disorders were found for PIR42100 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR42100 Gene

Publications for PIR42100 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

No data available for External Links for PIR42100 Gene

Products for PIR42100 Gene

Sources for PIR42100 Gene

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