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Aliases for PIR42085 Gene

Subcategory (RNA class) for PIR42085 Gene

piRNA

Quality Score for this RNA gene is

19

Aliases for PIR42085 Gene

No Aliases found

ORGUL Members for PIR42085 Gene

No data available for External Ids for PIR42085 Gene

Summaries for PIR42085 Gene

GeneCards Summary for PIR42085 Gene

PIR42085 is an RNA Gene, and is affiliated with the piRNA class.

fRNAdb sequence ontologies for PIR42085 Gene

  • piRNA: A small non coding RNA, part of a silencing system that prevents the spreading of selfish genetic elements.

Additional gene information for PIR42085 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for PIR42085 Gene

Genomics for PIR42085 Gene

GeneHancer (GH) Regulatory Elements for PIR42085 Gene

Promoters and enhancers for PIR42085 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J023518 Enhancer 1.1 Ensembl ENCODE dbSUPER 650.7 -1.2 -1226 1.9 MEIS2 GTF2F1 KLF1 PKNOX1 USF1 SMAD1 NFIB NCOA2 LCORL POLR2A PIR42085 DCTN5 NDUFAB1 GGA2
GH16J023516 Enhancer 0.9 Ensembl ENCODE dbSUPER 650.7 +0.9 916 0.4 POLR2A ZNF341 ELF1 RUNX3 SPI1 PIR42085 DCTN5 UBFD1 GGA2 LOC100419017
GH16J023508 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 0.4 +7.9 7919 2.6 HDGF PKNOX1 CLOCK SMAD1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A GGA2 PALB2 ENSG00000260905 DCTN5 LOC100419017 ENSG00000260751 COG7 NDUFAB1 UBFD1 PIR42085
GH16J023503 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +12.1 12115 4 HDGF PKNOX1 FOXA2 SIN3A FEZF1 ZNF2 IRF4 ZNF766 ZNF213 FOS DCTN5 COG7 UBFD1 GGA2 PRKCB LOC100419017 PIR42085
GH16J023520 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.7 -3.3 -3305 1.5 ZNF121 ZNF362 GGA2 DCTN5 PIR42085
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around PIR42085 on UCSC Golden Path with GeneCards custom track

Genomic Locations for PIR42085 Gene

Genomic Locations for PIR42085 Gene
chr16:23,517,705-23,517,731
(GRCh38/hg38)
Size:
27 bases
Orientation:
Minus strand
chr16:23,529,026-23,529,052
(GRCh37/hg19)
Size:
27 bases
Orientation:
Minus strand

Genomic View for PIR42085 Gene

Genes around PIR42085 on UCSC Golden Path with GeneCards custom track

PIR42085 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PIR42085 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Cytogenetic band and RefSeq DNA sequence for PIR42085 Gene

Function for PIR42085 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for PIR42085 Gene

Localization for PIR42085 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for PIR42085 Gene

Pathways & Interactions for PIR42085 Gene

SuperPathways for PIR42085 Gene

No Data Available

Interacting Proteins for PIR42085 Gene

Gene Ontology (GO) - Biological Process for PIR42085 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PIR42085 Gene

Drugs & Compounds for PIR42085 Gene

No Compound Related Data Available

Transcripts for PIR42085 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for PIR42085 Gene

No ASD Table

Relevant External Links for PIR42085 Gene

GeneLoc Exon Structure for
PIR42085

No data available for mRNA/cDNA for PIR42085 Gene

Expression for PIR42085 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for PIR42085 Gene

Orthologs for PIR42085 Gene

No data available for Orthologs and Evolution for PIR42085 Gene

Paralogs for PIR42085 Gene

No data available for Paralogs for PIR42085 Gene

Variants for PIR42085 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for PIR42085 Gene

Disorders for PIR42085 Gene

No disorders were found for PIR42085 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for PIR42085 Gene

Publications for PIR42085 Gene

  1. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A … Carmell MA (Nature 2006) 1
  2. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang KC … Mattick JS (Nucleic acids research 2005) 1

Products for PIR42085 Gene

Sources for PIR42085 Gene

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